Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59064 | Canola | nucleus | 97.98 | 97.98 |
| CDY52287 | Canola | nucleus | 96.46 | 96.46 |
| CDX94980 | Canola | nucleus | 96.46 | 96.46 |
| CDY20312 | Canola | nucleus | 96.46 | 96.46 |
| CDY09940 | Canola | nucleus | 96.46 | 96.46 |
| AT1G07090.1 | Thale cress | nucleus | 86.36 | 87.24 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 85.86 | 85.86 |
| Bra018337.1-P | Field mustard | cytosol | 61.11 | 73.33 |
| Bra020365.1-P | Field mustard | nucleus | 59.6 | 65.19 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 60.1 | 65.03 |
| Bra023738.1-P | Field mustard | plastid | 54.55 | 61.36 |
| OQU83235 | Sorghum | cytosol | 51.52 | 57.95 |
| Bra004711.1-P | Field mustard | nucleus | 47.98 | 56.89 |
| Bra016865.1-P | Field mustard | nucleus | 49.49 | 55.68 |
| Bra000269.1-P | Field mustard | nucleus | 48.99 | 54.8 |
| Bra014935.1-P | Field mustard | plastid | 55.05 | 54.77 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 51.01 | 54.01 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 52.02 | 53.93 |
| Bra009997.1-P | Field mustard | plastid | 51.52 | 53.12 |
| Bra021995.1-P | Field mustard | nucleus | 48.48 | 53.04 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 50.51 | 52.63 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 51.01 | 52.6 |
| Bra018263.1-P | Field mustard | nucleus | 56.06 | 51.63 |
| Bra021707.1-P | Field mustard | nucleus | 56.06 | 51.15 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 49.49 | 49.75 |
| Bra021000.1-P | Field mustard | nucleus, plastid | 47.98 | 49.22 |
| Bra013330.1-P | Field mustard | nucleus | 47.98 | 48.47 |
| Bra035066.1-P | Field mustard | nucleus | 46.46 | 48.42 |
| Bra008382.1-P | Field mustard | nucleus | 44.44 | 46.07 |
| Os05t0347400-01 | Rice | nucleus | 64.65 | 45.07 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 64.14 | 44.88 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 64.14 | 44.72 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 64.14 | 44.72 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 63.64 | 44.06 |
| Bra003637.1-P | Field mustard | nucleus | 33.33 | 41.25 |
| Zm00001d038016_P001 | Maize | extracellular | 61.62 | 40.53 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 62.12 | 38.92 |
| EES19345 | Sorghum | nucleus, plastid | 62.63 | 38.15 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 49.49 | 33.0 |
Protein Annotations
Description
AT1G07090 (E=2e-084) LSH6 | LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)
Coordinates
chrA09:+:35869927..35870523
Molecular Weight (calculated)
21628.6 Da
IEP (calculated)
10.050
GRAVY (calculated)
-0.789
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGSQRPGP VSEGDPGPSI VTPSSPPAAP SRYESQKRRD WTTFLQYLKN HKPPLALSRC SGAHAIEFLK YLDQFGKTKV HMAACPYFGH QQPPSPCACP
101: LKQAWGSLDA LIGRLRAAYE ENGGRPESNP FAARAVRIYL REVRESQGKA RGRPYEKKKR KRPTTVTTVR VDVAPSRQSE GDGCNIGDPS SGAEAVPP
101: LKQAWGSLDA LIGRLRAAYE ENGGRPESNP FAARAVRIYL REVRESQGKA RGRPYEKKKR KRPTTVTTVR VDVAPSRQSE GDGCNIGDPS SGAEAVPP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.