Factsheet for Bra016865.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47983	Canola	nucleus	100.0	100.0
CDY14848	Canola	nucleus	98.86	98.31
Bra000269.1-P	Field mustard	nucleus	93.75	93.22
AT2G42610.1	Thale cress	nucleus	93.18	92.66
Bra004711.1-P	Field mustard	nucleus	85.8	90.42
VIT_12s0028g02160.t01	Wine grape	nucleus	76.7	80.84
KRH27046	Soybean	nucleus	78.41	78.86
PGSC0003DMT400052658	Potato	nucleus	76.14	77.46
KRH55744	Soybean	nucleus	77.84	76.54
KRH25774	Soybean	nucleus	76.14	75.71
KRH22284	Soybean	nucleus	67.61	74.38
PGSC0003DMT400027334	Potato	nucleus	73.86	73.03
Solyc10g008000.1.1	Tomato	nucleus	72.73	71.91
Bra021000.1-P	Field mustard	nucleus, plastid	64.2	58.55
Bra013330.1-P	Field mustard	nucleus	64.2	57.65
Bra021995.1-P	Field mustard	nucleus	59.09	57.46
Bra023738.1-P	Field mustard	plastid	57.39	57.39
Bra035066.1-P	Field mustard	nucleus	61.93	57.37
Bra018337.1-P	Field mustard	cytosol	53.41	56.97
Bra020365.1-P	Field mustard	nucleus	57.39	55.8
Bra008382.1-P	Field mustard	nucleus	59.09	54.45
Bra002642.1-P	Field mustard	nucleus, plastid	56.25	54.1
Bra014935.1-P	Field mustard	plastid	59.66	52.76
Bra036134.1-P	Field mustard	nucleus, plastid	55.68	51.04
Bra009997.1-P	Field mustard	plastid	55.68	51.04
Bra015551.1-P	Field mustard	nucleus, plastid	57.39	51.01
Bra020610.1-P	Field mustard	nucleus, plastid	55.11	50.79
Bra031552.1-P	Field mustard	nucleus	55.68	49.49
Bra001109.1-P	Field mustard	nucleus, plastid	52.84	48.95
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	51.7	48.66
Bra018263.1-P	Field mustard	nucleus	58.52	47.91
Bra021707.1-P	Field mustard	nucleus	58.52	47.47
Bra040188.1-P	Field mustard	nucleus, plastid	52.84	47.21
Bra003637.1-P	Field mustard	nucleus	42.61	46.88
Bra040137.1-P	Field mustard	nucleus, plastid	55.68	33.0

Protein Annotations

EnsemblPlants:Bra016865.1	EnsemblPlants:Bra016865.1-P	EnsemblPlantsGene:Bra016865	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF10	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002543AAF	UniProt:M4DK37
MapMan:35.1	:	:	:	:	:

Description

AT2G42610 (E=1e-087) LSH10 | LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)

Coordinates

chrA04:+:17844121..17844651

Molecular Weight (calculated)

19740.3 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.865

Length

176 amino acids

Sequence
(BLAST)

001: MSSPGDRGKN FMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVFGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGSPE TNPFATGAIR VYLREVRECQ AKARGIPYKK KKKKPKTEMS GGRDDSSSSS SSFNFS

Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)

001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS

Arabidopsis Description

LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.