CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27046	Soybean	nucleus	94.38	86.29
KRH55744	Soybean	nucleus	83.75	74.86
KRH25774	Soybean	nucleus	82.5	74.58
VIT_12s0028g02160.t01	Wine grape	nucleus	77.5	74.25
Bra000269.1-P	Field mustard	nucleus	76.88	69.49
PGSC0003DMT400052658	Potato	nucleus	74.38	68.79
AT2G42610.1	Thale cress	nucleus	75.62	68.36
Bra004711.1-P	Field mustard	nucleus	70.62	67.66
CDY47983	Canola	nucleus	74.38	67.61
Bra016865.1-P	Field mustard	nucleus	74.38	67.61
CDY14848	Canola	nucleus	74.38	67.23
KRH42865	Soybean	plastid	70.0	67.07
CDY55387	Canola	nucleus	74.38	66.85
Solyc10g008000.1.1	Tomato	nucleus	72.5	65.17
PGSC0003DMT400027334	Potato	nucleus	72.5	65.17
KRH27347	Soybean	nucleus	72.5	63.04
KRH21273	Soybean	nucleus	70.0	61.88
KRH11015	Soybean	nucleus	69.38	61.33
KRH21973	Soybean	nucleus	72.5	59.79
KRH34151	Soybean	plastid	54.38	49.43
KRG92633	Soybean	nucleus	55.62	46.84
KRG92413	Soybean	nucleus	55.62	46.35
KRG97044	Soybean	plastid	52.5	45.9
KRH68792	Soybean	plastid	51.88	45.11
KRH34391	Soybean	nucleus	56.25	44.55
KRH32192	Soybean	nucleus	57.5	44.44
KRH67397	Soybean	nucleus	55.62	43.84
KRG95674	Soybean	nucleus	55.62	43.84
KRH56293	Soybean	nucleus	56.88	43.13
KRH17088	Soybean	nucleus	54.38	39.91
KRH58368	Soybean	nucleus	58.75	39.83
KRH72732	Soybean	nucleus	53.75	39.27
KRH30185	Soybean	nucleus	55.62	37.87
KRH42251	Soybean	plastid	58.12	37.65
KRG98226	Soybean	nucleus	54.38	37.5

Protein Annotations

MapMan:35.1	EMBL:ACUP02008402	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_13G290600	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	UniProt:I1M3L7	InterPro:IPR006936
EnsemblPlants:KRH22284	ProteinID:KRH22284	ProteinID:KRH22284.1	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165
PANTHER:PTHR31165:SF10	UniParc:UPI00029492DA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:39081781..39082309

Molecular Weight (calculated)

17920.9 Da

IEP (calculated)

10.027

GRAVY (calculated)

-0.996

Length

160 amino acids

Sequence
(BLAST)

001: MSSSSGKDLG EGSSSPTENY QQSPGTLSRY ESQKRRDWNT FGQYLKNQRP PVPLSQCNCN HVLDFLRYLD QFGKTKHLAH APFRQAWGSL DALIGRLRAA
101: YEENGGSPET NPFASGSIRV YLKEIRECQA KARGIPYKKK KKASNPSKGN DESSSTMHFS

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.