Factsheet for Bra004711.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55387	Canola	nucleus	99.4	93.26
Bra000269.1-P	Field mustard	nucleus	92.81	87.57
AT2G42610.1	Thale cress	nucleus	92.81	87.57
Bra016865.1-P	Field mustard	nucleus	90.42	85.8
VIT_12s0028g02160.t01	Wine grape	nucleus	76.65	76.65
KRH27046	Soybean	nucleus	79.04	75.43
PGSC0003DMT400052658	Potato	nucleus	77.84	75.14
KRH55744	Soybean	nucleus	80.24	74.86
KRH25774	Soybean	nucleus	78.44	74.01
KRH22284	Soybean	nucleus	67.66	70.62
Solyc10g008000.1.1	Tomato	nucleus	70.66	66.29
PGSC0003DMT400027334	Potato	nucleus	70.66	66.29
Bra023738.1-P	Field mustard	plastid	60.48	57.39
Bra018337.1-P	Field mustard	cytosol	54.49	55.15
Bra021000.1-P	Field mustard	nucleus, plastid	63.47	54.92
Bra021995.1-P	Field mustard	nucleus	59.28	54.7
Bra013330.1-P	Field mustard	nucleus	64.07	54.59
Bra020365.1-P	Field mustard	nucleus	58.68	54.14
Bra035066.1-P	Field mustard	nucleus	61.08	53.68
Bra002642.1-P	Field mustard	nucleus, plastid	56.89	51.91
Bra014935.1-P	Field mustard	plastid	61.68	51.76
Bra008382.1-P	Field mustard	nucleus	58.08	50.79
Bra036134.1-P	Field mustard	nucleus, plastid	58.08	50.52
Bra009997.1-P	Field mustard	plastid	58.08	50.52
Bra020610.1-P	Field mustard	nucleus, plastid	57.48	50.26
Bra015551.1-P	Field mustard	nucleus, plastid	58.08	48.99
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	54.49	48.66
Bra001109.1-P	Field mustard	nucleus, plastid	55.09	48.42
Bra031552.1-P	Field mustard	nucleus	56.89	47.98
Bra040188.1-P	Field mustard	nucleus, plastid	55.69	47.21
Bra018263.1-P	Field mustard	nucleus	59.88	46.51
Bra021707.1-P	Field mustard	nucleus	59.88	46.08
Bra003637.1-P	Field mustard	nucleus	40.72	42.5
Bra040137.1-P	Field mustard	nucleus, plastid	58.68	33.0

Protein Annotations

EnsemblPlants:Bra004711.1	EnsemblPlants:Bra004711.1-P	EnsemblPlantsGene:Bra004711	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF10	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002547987	UniProt:M4CKH6
MapMan:35.1	:	:	:	:	:

Description

AT2G42610 (E=7e-084) LSH10 | LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)

Coordinates

chrA05:+:1472662..1473165

Molecular Weight (calculated)

18608.0 Da

IEP (calculated)

9.538

GRAVY (calculated)

-0.817

Length

167 amino acids

Sequence
(BLAST)

001: MESSGSEPPV TPSRYESQKR RDWNTFGQYL RNQRPPLPMS HCNCNHVLDF LRHLDQFGKT KVHVPGCMFY GQPEPPAPCT CPLRQAWGSL DALIGRLRAA
101: YEENGGSPET NPFASGAIRV YLREVRECQA KARGIPFKKK KKKPTTTEMG GGREDSSSSS ASPFGFS

Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)

001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS

Arabidopsis Description

LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.