Factsheet for Bra040137.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21126	Canola	nucleus, plastid	62.96	98.42
CDY30000	Canola	nucleus, plastid	62.29	97.37
Bra040188.1-P	Field mustard	nucleus, plastid	55.22	83.25
AT3G04510.1	Thale cress	nucleus, plastid	54.55	80.6
Bra001109.1-P	Field mustard	nucleus, plastid	49.49	77.37
Bra020610.1-P	Field mustard	nucleus, plastid	48.48	75.39
Bra036134.1-P	Field mustard	nucleus, plastid	47.47	73.44
Bra009997.1-P	Field mustard	plastid	46.8	72.4
GSMUA_Achr11P...	Banana	nucleus	21.55	68.09
KRH34151	Soybean	plastid	39.06	65.91
Zm00001d025863_P001	Maize	nucleus	35.69	63.1
Bra023738.1-P	Field mustard	plastid	37.37	63.07
VIT_14s0036g00540.t01	Wine grape	plastid	39.73	61.78
KRG92633	Soybean	nucleus	39.39	61.58
KRG97044	Soybean	plastid	37.04	60.11
Solyc04g009980.2.1	Tomato	nucleus, plastid	36.36	60.0
PGSC0003DMT400060169	Potato	nucleus, plastid	41.75	59.33
GSMUA_Achr5P18640_001	Banana	nucleus	34.34	59.3
PGSC0003DMT400029945	Potato	nucleus	36.36	59.02
Bra018337.1-P	Field mustard	cytosol	32.66	58.79
Solyc05g055020.2.1	Tomato	nucleus	41.75	58.77
KRH68792	Soybean	plastid	36.36	58.7
Bra004711.1-P	Field mustard	nucleus	33.0	58.68
Bra014935.1-P	Field mustard	plastid	39.06	58.29
Bra016865.1-P	Field mustard	nucleus	33.0	55.68
Bra000269.1-P	Field mustard	nucleus	33.0	55.37
HORVU2Hr1G089190.1	Barley	nucleus	37.04	55.28
EES11114	Sorghum	nucleus	37.04	55.28
Zm00001d003057_P001	Maize	nucleus	37.04	55.0
GSMUA_Achr5P03870_001	Banana	nucleus	31.99	54.91
TraesCS2D01G378900.1	Wheat	nucleus	37.04	54.73
GSMUA_Achr5P14570_001	Banana	nucleus	31.65	54.34
TraesCS2A01G382500.1	Wheat	nucleus	36.7	54.23
TraesCS2B01G399800.1	Wheat	nucleus	36.7	54.23
Bra020365.1-P	Field mustard	nucleus	33.0	54.14
TraesCS6B01G256500.1	Wheat	nucleus	36.36	54.0
TraesCS6D01G209700.1	Wheat	nucleus	36.7	53.96
TraesCS6A01G225000.1	Wheat	nucleus	36.7	53.96
Os10t0478000-01	Rice	nucleus	37.04	53.92
GSMUA_Achr4P21940_001	Banana	nucleus	31.65	53.71
Bra018263.1-P	Field mustard	nucleus	38.72	53.49
Os04t0516200-01	Rice	nucleus	36.36	53.47
HORVU6Hr1G058340.2	Barley	nucleus	36.7	53.43
TraesCS1D01G153700.1	Wheat	nucleus	37.04	53.4
TraesCS1B01G172100.1	Wheat	nucleus	37.04	53.4
GSMUA_Achr4P28760_001	Banana	nucleus	32.66	53.01
Bra021707.1-P	Field mustard	nucleus	38.72	53.0
GSMUA_AchrUn_...	Banana	nucleus	27.27	52.6
Zm00001d051143_P001	Maize	nucleus	35.69	52.48
Zm00001d017263_P001	Maize	nucleus	36.03	52.45
KXG30661	Sorghum	nucleus	36.7	52.4
Zm00001d014032_P001	Maize	nucleus	37.04	52.38
GSMUA_Achr1P09270_001	Banana	nucleus	29.97	51.74
Zm00001d032696_P001	Maize	nucleus	37.04	51.64
Bra002642.1-P	Field mustard	nucleus, plastid	31.65	51.37
Os02t0623400-00	Rice	nucleus	35.69	50.72
GSMUA_Achr1P05650_001	Banana	nucleus	27.95	50.61
Bra015551.1-P	Field mustard	nucleus, plastid	33.67	50.51
Bra021995.1-P	Field mustard	nucleus	30.64	50.28
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	31.31	49.73
Bra031552.1-P	Field mustard	nucleus	33.0	49.49
KXG38327	Sorghum	nucleus	37.04	49.33
Bra035066.1-P	Field mustard	nucleus	31.31	48.95
HORVU1Hr1G041240.5	Barley	nucleus	37.37	48.9
Bra021000.1-P	Field mustard	nucleus, plastid	31.65	48.7
Bra008382.1-P	Field mustard	nucleus	30.3	47.12
Bra013330.1-P	Field mustard	nucleus	30.98	46.94
GSMUA_Achr6P36540_001	Banana	nucleus	25.25	46.58
TraesCS1A01G154900.1	Wheat	nucleus	37.04	45.64
Zm00001d051966_P001	Maize	nucleus	37.71	45.53
Zm00001d018433_P001	Maize	nucleus	37.71	45.34
Os02t0811000-01	Rice	nucleus	37.37	44.76
EES05986	Sorghum	nucleus	37.71	44.62
TraesCS6A01G377300.1	Wheat	nucleus	37.37	44.05
TraesCS6B01G414700.1	Wheat	nucleus	37.37	44.05
TraesCS6D01G361900.1	Wheat	nucleus	37.37	44.05
HORVU6Hr1G088790.1	Barley	nucleus	37.04	42.97
Bra003637.1-P	Field mustard	nucleus	21.55	40.0

Protein Annotations

EnsemblPlants:Bra040137.1	EnsemblPlants:Bra040137.1-P	EnsemblPlantsGene:Bra040137	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002544EB0	UniProt:M4FGA9
MapMan:35.1	:	:	:	:	:

Description

AT3G04510 (E=2e-073) LSH2 | LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)

Coordinates

chrA01:+:28441006..28443962

Molecular Weight (calculated)

33087.2 Da

IEP (calculated)

10.780

GRAVY (calculated)

-0.736

Length

297 amino acids

Sequence
(BLAST)

001: MDLISQEHNI KNPNTTLTTQ PSSSSSSPPS SSRYENQKRR DWNTFCQYLR NHRPPLSPPS CSGEHVLEFL RYLDQFGKTK VHHQNCSFFG LLNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGVPETS PFGSRSVRIF LREVREFQAK SRGVSYKKKR KTVNNKQITQ SSSQPPLQPQ PQQHQHEREE REERESRSGS
201: GERSARRRAC RHRNRLSFLV RLSSPFFGSL PLIRLAGAQS RGGVKCGEVI LREVEATKAP SPPVKSPGGV WLLQQASSVL SPGGEGVLSL ASPVLVG

Best Arabidopsis Sequence Match ( AT3G04510.1 )
(BLAST)

001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q

Arabidopsis Description

LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.