Factsheet for Solyc04g009980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	Solyc03g113720.2.1	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029945	Potato	nucleus	92.22	90.71
GSMUA_Achr11P...	Banana	nucleus	32.78	62.77
Solyc09g025280.1.1	Tomato	nucleus	57.78	60.82
KRH34151	Soybean	plastid	59.44	60.8
AT5G28490.1	Thale cress	nucleus, plastid	61.67	58.42
CDY05593	Canola	nucleus, plastid	61.67	58.12
CDY52505	Canola	nucleus, plastid	61.67	58.12
Zm00001d025863_P001	Maize	nucleus	53.89	57.74
Bra020610.1-P	Field mustard	nucleus, plastid	61.11	57.59
VIT_14s0036g00540.t01	Wine grape	plastid	61.11	57.59
KRG97044	Soybean	plastid	58.33	57.38
KRG92633	Soybean	nucleus	60.56	57.37
CDY64755	Canola	nucleus, plastid	61.11	57.29
CDY21126	Canola	nucleus, plastid	60.0	56.84
CDY52479	Canola	nucleus, plastid	60.0	56.84
CDY57024	Canola	nucleus, plastid	60.56	56.77
CDY63294	Canola	nucleus	57.78	56.52
CDY30000	Canola	nucleus, plastid	59.44	56.32
Bra036134.1-P	Field mustard	nucleus, plastid	60.0	56.25
CDY49331	Canola	nucleus, plastid	61.11	56.12
KRH68792	Soybean	plastid	57.22	55.98
Solyc05g055020.2.1	Tomato	nucleus	65.56	55.92
CDY42932	Canola	nucleus, plastid	61.11	55.84
Bra001109.1-P	Field mustard	nucleus, plastid	58.89	55.79
CDX74186	Canola	nucleus, plastid	58.89	55.79
Solyc07g062470.2.1	Tomato	nucleus	45.56	55.78
CDX86199	Canola	plastid	59.44	55.73
AT3G04510.1	Thale cress	nucleus, plastid	62.22	55.72
Bra040188.1-P	Field mustard	nucleus, plastid	60.56	55.33
Bra009997.1-P	Field mustard	plastid	58.33	54.69
Solyc02g069510.1.1	Tomato	nucleus	53.33	53.04
GSMUA_Achr5P14570_001	Banana	nucleus	50.56	52.6
TraesCS2A01G382500.1	Wheat	nucleus	58.33	52.24
TraesCS2D01G378900.1	Wheat	nucleus	58.33	52.24
GSMUA_Achr5P03870_001	Banana	nucleus	50.0	52.02
TraesCS6B01G256500.1	Wheat	nucleus	57.78	52.0
Solyc09g090180.1.1	Tomato	plastid	60.0	51.92
EES11114	Sorghum	nucleus	57.22	51.76
HORVU2Hr1G089190.1	Barley	nucleus	57.22	51.76
TraesCS2B01G399800.1	Wheat	nucleus	57.78	51.74
Zm00001d003057_P001	Maize	nucleus	57.22	51.5
TraesCS6A01G225000.1	Wheat	nucleus	57.78	51.49
TraesCS6D01G209700.1	Wheat	nucleus	57.78	51.49
Solyc10g008000.1.1	Tomato	nucleus	50.56	51.12
HORVU6Hr1G058340.2	Barley	nucleus	57.78	50.98
GSMUA_Achr5P18640_001	Banana	nucleus	48.33	50.58
Solyc02g076820.2.1	Tomato	plastid	53.89	50.52
TraesCS1D01G153700.1	Wheat	nucleus	57.78	50.49
TraesCS1B01G172100.1	Wheat	nucleus	57.78	50.49
Os04t0516200-01	Rice	nucleus	56.11	50.0
Zm00001d051143_P001	Maize	nucleus	56.11	50.0
GSMUA_Achr4P28760_001	Banana	nucleus	50.56	49.73
GSMUA_Achr4P21940_001	Banana	nucleus	48.33	49.71
Zm00001d014032_P001	Maize	nucleus	57.22	49.05
KXG30661	Sorghum	nucleus	56.67	49.04
Os10t0478000-01	Rice	nucleus	55.56	49.02
Zm00001d017263_P001	Maize	nucleus	55.56	49.02
Zm00001d032696_P001	Maize	nucleus	57.22	48.36
GSMUA_Achr1P09270_001	Banana	nucleus	46.11	48.26
GSMUA_Achr1P05650_001	Banana	nucleus	43.89	48.17
Os02t0623400-00	Rice	nucleus	55.56	47.85
Solyc12g014260.1.1	Tomato	nucleus	53.89	47.32
KXG38327	Sorghum	nucleus	57.78	46.64
HORVU1Hr1G041240.5	Barley	nucleus	58.33	46.26
Solyc06g083860.2.1	Tomato	nucleus	55.56	45.87
Solyc10g007310.1.1	Tomato	plastid	53.33	45.07
Solyc06g082210.1.1	Tomato	nucleus	55.0	44.59
GSMUA_AchrUn_...	Banana	nucleus	37.22	43.51
TraesCS1A01G154900.1	Wheat	nucleus	57.78	43.15
GSMUA_Achr6P36540_001	Banana	nucleus	38.33	42.86
Zm00001d051966_P001	Maize	nucleus	58.33	42.68
Zm00001d018433_P001	Maize	nucleus	58.33	42.51
Os02t0811000-01	Rice	nucleus	57.78	41.94
EES05986	Sorghum	nucleus	58.33	41.83
TraesCS6D01G361900.1	Wheat	nucleus	57.78	41.27
TraesCS6B01G414700.1	Wheat	nucleus	57.78	41.27
TraesCS6A01G377300.1	Wheat	nucleus	57.78	41.27
HORVU6Hr1G088790.1	Barley	nucleus	57.78	40.62
Bra040137.1-P	Field mustard	nucleus, plastid	60.0	36.36

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936	UniProt:K4BPF3	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF36	EnsemblPlantsGene:Solyc04g009980.2	EnsemblPlants:Solyc04g009980.2.1	UniParc:UPI0002765C1A	SEG:seg

Description

No Description!

Coordinates

chr4:+:3297717..3299388

Molecular Weight (calculated)

20860.9 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.748

Length

180 amino acids

Sequence
(BLAST)

001: MDVANDNPSN DVVDILSTPR LSRYESQKRR DWNTFCQYIR NHHPLMSLLQ CSSIHVLEFL RYLDQFGKTK VHNSNCPFFG MINPPAPCAC PLRQAWGSLD
101: ALIGRLRAAY EEHGGNSEMN PFGARSIKLF LRDVRNFQSK SRGISYDKKR KRSKRNHKNI MEMKEVDHQI HDDKNVGANL

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.