CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003057_P001	Maize	nucleus	98.49	98.0
Zm00001d025863_P001	Maize	nucleus	80.9	95.83
GSMUA_Achr11P...	Banana	nucleus	39.7	84.04
TraesCS6A01G225000.1	Wheat	nucleus	81.41	80.2
TraesCS6D01G209700.1	Wheat	nucleus	81.41	80.2
TraesCS6B01G256500.1	Wheat	nucleus	80.4	80.0
Os02t0623400-00	Rice	nucleus	83.42	79.43
HORVU6Hr1G058340.2	Barley	nucleus	81.41	79.41
KXG30661	Sorghum	nucleus	82.41	78.85
KRH34151	Soybean	plastid	61.81	69.89
Bra023738.1-P	Field mustard	plastid	61.81	69.89
Solyc09g025280.1.1	Tomato	nucleus	59.8	69.59
VIT_07s0005g03530.t01	Wine grape	nucleus	63.82	69.4
KXG38327	Sorghum	nucleus	75.38	67.26
KRG92413	Soybean	nucleus	64.32	66.67
KRG97044	Soybean	plastid	60.8	66.12
KRG92633	Soybean	nucleus	62.81	65.79
VIT_05s0049g01170.t01	Wine grape	nucleus	66.33	65.67
CDY69731	Canola	plastid	64.32	65.64
CDY35523	Canola	plastid	64.32	65.64
PGSC0003DMT400026698	Potato	nucleus	60.8	65.41
KRG95674	Soybean	nucleus	66.33	65.02
KRH67397	Soybean	nucleus	66.33	65.02
KRH34391	Soybean	nucleus	65.83	64.85
AT3G23290.2	Thale cress	plastid	63.32	64.62
VIT_14s0036g00540.t01	Wine grape	plastid	61.81	64.4
KRH68792	Soybean	plastid	59.3	64.13
CDX85083	Canola	plastid	63.82	63.82
Bra014935.1-P	Field mustard	plastid	63.82	63.82
CDX77531	Canola	plastid	63.82	63.82
KRH32192	Soybean	nucleus	65.83	63.28
GSMUA_Achr5P18640_001	Banana	nucleus	53.77	62.21
CDY52479	Canola	nucleus, plastid	59.3	62.11
AT5G28490.1	Thale cress	nucleus, plastid	59.3	62.11
PGSC0003DMT400044213	Potato	mitochondrion	63.32	62.07
CDX86199	Canola	plastid	59.8	61.98
CDY57024	Canola	nucleus, plastid	59.3	61.46
GSMUA_Achr5P03870_001	Banana	nucleus	53.27	61.27
GSMUA_Achr5P14570_001	Banana	nucleus	53.27	61.27
Bra020610.1-P	Field mustard	nucleus, plastid	58.79	61.26
KRH56293	Soybean	nucleus	64.82	61.14
Solyc09g090180.1.1	Tomato	plastid	63.82	61.06
Bra036134.1-P	Field mustard	nucleus, plastid	58.79	60.94
Bra009997.1-P	Field mustard	plastid	58.79	60.94
CDY52505	Canola	nucleus, plastid	58.29	60.73
CDY05593	Canola	nucleus, plastid	58.29	60.73
CDY64755	Canola	nucleus, plastid	57.79	59.9
GSMUA_Achr4P21940_001	Banana	nucleus	52.26	59.43
PGSC0003DMT400051692	Potato	nucleus	61.81	59.13
OQU83235	Sorghum	cytosol	51.76	58.52
CDY63294	Canola	nucleus	53.77	58.15
PGSC0003DMT400029945	Potato	nucleus	53.27	57.92
CDY21126	Canola	nucleus, plastid	55.28	57.89
Bra018263.1-P	Field mustard	nucleus	62.31	57.67
CDY10790	Canola	nucleus	62.31	57.67
Bra001109.1-P	Field mustard	nucleus, plastid	54.77	57.37
CDY30000	Canola	nucleus, plastid	54.77	57.37
CDX74186	Canola	nucleus, plastid	54.77	57.37
Solyc06g083860.2.1	Tomato	nucleus	62.81	57.34
Solyc04g009980.2.1	Tomato	nucleus, plastid	51.76	57.22
CDY24755	Canola	nucleus, plastid	61.81	57.21
CDY57087	Canola	nucleus	62.31	57.14
CDY57088	Canola	nucleus	62.31	57.14
CDY15426	Canola	nucleus	62.31	57.14
Bra021707.1-P	Field mustard	nucleus	62.31	57.14
AT2G31160.1	Thale cress	nucleus	62.81	57.08
CDY49331	Canola	nucleus, plastid	55.78	56.63
CDY42932	Canola	nucleus, plastid	55.78	56.35
GSMUA_Achr4P28760_001	Banana	nucleus	51.76	56.28
AT3G04510.1	Thale cress	nucleus, plastid	56.78	56.22
Bra040188.1-P	Field mustard	nucleus, plastid	55.28	55.84
EES05986	Sorghum	nucleus	68.84	54.58
OQU87784	Sorghum	nucleus	58.29	53.95
PGSC0003DMT400060169	Potato	nucleus, plastid	56.28	53.59
Solyc05g055020.2.1	Tomato	nucleus	56.78	53.55
EES04579	Sorghum	nucleus	61.31	47.29
OQU76862	Sorghum	nucleus	65.33	46.1
KXG34092	Sorghum	nucleus	65.33	46.1
EES18364	Sorghum	nucleus	58.29	45.14
EES19345	Sorghum	nucleus, plastid	62.31	38.15
EER97956	Sorghum	mitochondrion, nucleus	53.77	37.68
Bra040137.1-P	Field mustard	nucleus, plastid	55.28	37.04

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	UniProt:C5YC33	EnsemblPlants:EES11114	ProteinID:EES11114	ProteinID:EES11114.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987
InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF12	EnsemblPlantsGene:SORBI_3006G147500
UniParc:UPI0001A86E15	RefSeq:XP_002446786.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:50914667..50916048

Molecular Weight (calculated)

21376.2 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.807

Length

199 amino acids

Sequence
(BLAST)

001: MDMSPNPDSP SSGGGNGIGP SSGGASPSVG SMTAPQSPSR YEAQKRRDWN TFGQYLRNHR PPLSLAQCSG AHVLEFLRYL DQFGKTKVHG PACPFFGHPN
101: PPAPCPCPLR QAWGSLDALV GRLRAAFEEN GGRPESNPFA ARAVRLYLRE VREHQARARG VSYEKKKRKK PQQLPGDSSG GLHGHTHQPP PPPPAGAAC

Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)

001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK

Arabidopsis Description

LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.