Factsheet for Bra018263.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10790	Canola	nucleus	100.0	100.0
CDY24755	Canola	nucleus, plastid	95.35	95.35
Bra021707.1-P	Field mustard	nucleus	93.02	92.17
AT2G31160.1	Thale cress	nucleus	90.7	89.04
GSMUA_Achr11P...	Banana	nucleus	34.42	78.72
VIT_07s0005g03530.t01	Wine grape	nucleus	65.58	77.05
Solyc09g025280.1.1	Tomato	nucleus	60.0	75.44
Bra023738.1-P	Field mustard	plastid	60.0	73.3
PGSC0003DMT400026698	Potato	nucleus	61.4	71.35
KRH67397	Soybean	nucleus	66.05	69.95
Bra014935.1-P	Field mustard	plastid	64.65	69.85
Zm00001d025863_P001	Maize	nucleus	54.42	69.64
KRH32192	Soybean	nucleus	66.98	69.57
KRG95674	Soybean	nucleus	65.58	69.46
KRH56293	Soybean	nucleus	66.51	67.77
PGSC0003DMT400051692	Potato	nucleus	63.26	65.38
GSMUA_Achr5P18640_001	Banana	nucleus	51.16	63.95
Bra020610.1-P	Field mustard	nucleus, plastid	56.74	63.87
Bra036134.1-P	Field mustard	nucleus, plastid	55.81	62.5
Bra020365.1-P	Field mustard	nucleus	52.56	62.43
EES11114	Sorghum	nucleus	57.67	62.31
Zm00001d003057_P001	Maize	nucleus	57.67	62.0
Solyc06g083860.2.1	Tomato	nucleus	62.79	61.93
Os04t0516200-01	Rice	nucleus	58.14	61.88
HORVU2Hr1G089190.1	Barley	nucleus	57.21	61.81
TraesCS2D01G378900.1	Wheat	nucleus	57.67	61.69
GSMUA_Achr5P03870_001	Banana	nucleus	49.3	61.27
Bra018337.1-P	Field mustard	cytosol	46.98	61.21
TraesCS2A01G382500.1	Wheat	nucleus	57.21	61.19
GSMUA_Achr4P21940_001	Banana	nucleus	49.77	61.14
GSMUA_Achr1P09270_001	Banana	nucleus	48.84	61.05
Bra009997.1-P	Field mustard	plastid	54.42	60.94
TraesCS2B01G399800.1	Wheat	nucleus	56.74	60.7
TraesCS6B01G256500.1	Wheat	nucleus	56.28	60.5
Os10t0478000-01	Rice	nucleus	57.21	60.29
TraesCS1D01G153700.1	Wheat	nucleus	57.67	60.19
TraesCS1B01G172100.1	Wheat	nucleus	57.67	60.19
GSMUA_Achr5P14570_001	Banana	nucleus	48.37	60.12
Bra002642.1-P	Field mustard	nucleus, plastid	51.16	60.11
Zm00001d014032_P001	Maize	nucleus	58.6	60.0
TraesCS6A01G225000.1	Wheat	nucleus	56.28	59.9
TraesCS6D01G209700.1	Wheat	nucleus	56.28	59.9
Zm00001d051143_P001	Maize	nucleus	56.28	59.9
Bra040188.1-P	Field mustard	nucleus, plastid	54.88	59.9
Bra004711.1-P	Field mustard	nucleus	46.51	59.88
GSMUA_AchrUn_...	Banana	nucleus	42.79	59.74
Zm00001d032696_P001	Maize	nucleus	59.07	59.62
Bra001109.1-P	Field mustard	nucleus, plastid	52.56	59.47
HORVU6Hr1G058340.2	Barley	nucleus	56.28	59.31
Zm00001d017263_P001	Maize	nucleus	56.28	59.31
KXG30661	Sorghum	nucleus	56.74	58.65
Bra016865.1-P	Field mustard	nucleus	47.91	58.52
Os02t0623400-00	Rice	nucleus	56.28	57.89
Bra000269.1-P	Field mustard	nucleus	47.44	57.63
KXG38327	Sorghum	nucleus	58.6	56.5
GSMUA_Achr4P28760_001	Banana	nucleus	47.91	56.28
Bra031552.1-P	Field mustard	nucleus	51.63	56.06
HORVU1Hr1G041240.5	Barley	nucleus	58.6	55.51
Bra015551.1-P	Field mustard	nucleus, plastid	50.23	54.55
GSMUA_Achr1P05650_001	Banana	nucleus	41.4	54.27
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	46.98	54.01
Zm00001d018433_P001	Maize	nucleus	60.93	53.04
Os02t0811000-01	Rice	nucleus	60.47	52.42
TraesCS6D01G361900.1	Wheat	nucleus	61.4	52.38
TraesCS6B01G414700.1	Wheat	nucleus	61.4	52.38
TraesCS6A01G377300.1	Wheat	nucleus	61.4	52.38
Zm00001d051966_P001	Maize	nucleus	59.53	52.03
EES05986	Sorghum	nucleus	60.47	51.79
GSMUA_Achr6P36540_001	Banana	nucleus	38.6	51.55
TraesCS1A01G154900.1	Wheat	nucleus	57.67	51.45
HORVU6Hr1G088790.1	Barley	nucleus	60.93	51.17
Bra035066.1-P	Field mustard	nucleus	43.26	48.95
Bra021995.1-P	Field mustard	nucleus	40.93	48.62
Bra021000.1-P	Field mustard	nucleus, plastid	42.33	47.15
Bra008382.1-P	Field mustard	nucleus	41.86	47.12
Bra013330.1-P	Field mustard	nucleus	42.33	46.43
Bra003637.1-P	Field mustard	nucleus	31.16	41.88
Bra040137.1-P	Field mustard	nucleus, plastid	53.49	38.72

Protein Annotations

EnsemblPlants:Bra018263.1	EnsemblPlants:Bra018263.1-P	EnsemblPlantsGene:Bra018263	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI00025479CA	UniProt:M4DP23
MapMan:35.1	:	:	:	:	:

Description

AT2G31160 (E=4e-078) LSH3 | LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)

Coordinates

chrA05:+:6991728..6992375

Molecular Weight (calculated)

23714.0 Da

IEP (calculated)

10.448

GRAVY (calculated)

-0.664

Length

215 amino acids

Sequence
(BLAST)

001: MDMIPQLMEG SSAYLGTSNL SINANILSSS GTTATQPPSS SSPSANSSRY ENQKRRDWNT FGQYLRNHRP PLSLSRCSGA HVLEFLRYLD QFGKTKVHTT
101: ICHFYGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAFEENG GKPETNPFGA RAVRLYLREV RDTQSKARGV SYEKKKRKRP VPTLSASSSS AVASHQQFQM
201: LPGTSSTTQI SNLEK

Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)

001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK

Arabidopsis Description

LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.