Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05986 | Sorghum | nucleus | 98.38 | 96.81 |
| Zm00001d051966_P001 | Maize | nucleus | 92.71 | 93.09 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 90.28 | 88.49 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 90.28 | 88.49 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 90.28 | 88.49 |
| Os02t0811000-01 | Rice | nucleus | 88.66 | 88.31 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 89.47 | 86.33 |
| GSMUA_Achr11P... | Banana | nucleus | 30.77 | 80.85 |
| Bra023738.1-P | Field mustard | plastid | 53.85 | 75.57 |
| Zm00001d025863_P001 | Maize | nucleus | 49.8 | 73.21 |
| Solyc09g025280.1.1 | Tomato | nucleus | 50.61 | 73.1 |
| CDY69731 | Canola | plastid | 56.68 | 71.79 |
| CDY35523 | Canola | plastid | 56.68 | 71.79 |
| AT3G23290.2 | Thale cress | plastid | 56.28 | 71.28 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 51.82 | 69.95 |
| PGSC0003DMT400026698 | Potato | nucleus | 52.23 | 69.73 |
| CDX77531 | Canola | plastid | 55.87 | 69.35 |
| CDX85083 | Canola | plastid | 55.87 | 69.35 |
| Bra014935.1-P | Field mustard | plastid | 55.87 | 69.35 |
| KRH34151 | Soybean | plastid | 48.99 | 68.75 |
| KRG92413 | Soybean | nucleus | 53.04 | 68.23 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 55.47 | 68.16 |
| Zm00001d003057_P001 | Maize | nucleus | 55.06 | 68.0 |
| KRH67397 | Soybean | nucleus | 55.06 | 67.0 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 46.56 | 66.86 |
| KRG95674 | Soybean | nucleus | 54.66 | 66.5 |
| KRG92633 | Soybean | nucleus | 50.61 | 65.79 |
| Zm00001d017263_P001 | Maize | nucleus | 53.85 | 65.2 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 53.44 | 65.02 |
| KRH34391 | Soybean | nucleus | 53.04 | 64.85 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.34 | 64.74 |
| KRH32192 | Soybean | nucleus | 54.25 | 64.73 |
| Zm00001d051143_P001 | Maize | nucleus | 52.63 | 64.36 |
| Zm00001d014032_P001 | Maize | nucleus | 54.66 | 64.29 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 44.94 | 64.16 |
| Solyc09g090180.1.1 | Tomato | plastid | 53.85 | 63.94 |
| KRG97044 | Soybean | plastid | 47.37 | 63.93 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 49.39 | 63.87 |
| KRH56293 | Soybean | nucleus | 53.85 | 63.03 |
| Zm00001d032696_P001 | Maize | nucleus | 53.85 | 62.44 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 47.77 | 62.11 |
| KRH68792 | Soybean | plastid | 46.15 | 61.96 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 43.72 | 61.71 |
| CDY52479 | Canola | nucleus, plastid | 47.37 | 61.58 |
| PGSC0003DMT400051692 | Potato | nucleus | 51.82 | 61.54 |
| CDY57024 | Canola | nucleus, plastid | 47.77 | 61.46 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 45.34 | 61.2 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 47.37 | 60.94 |
| CDX86199 | Canola | plastid | 47.37 | 60.94 |
| Bra018263.1-P | Field mustard | nucleus | 53.04 | 60.93 |
| CDY10790 | Canola | nucleus | 53.04 | 60.93 |
| CDY52505 | Canola | nucleus, plastid | 46.96 | 60.73 |
| CDY05593 | Canola | nucleus, plastid | 46.96 | 60.73 |
| Solyc06g083860.2.1 | Tomato | nucleus | 53.44 | 60.55 |
| CDY24755 | Canola | nucleus, plastid | 52.63 | 60.47 |
| CDY64755 | Canola | nucleus, plastid | 46.96 | 60.42 |
| CDY57088 | Canola | nucleus | 53.04 | 60.37 |
| CDY15426 | Canola | nucleus | 53.04 | 60.37 |
| CDY57087 | Canola | nucleus | 53.04 | 60.37 |
| Bra021707.1-P | Field mustard | nucleus | 53.04 | 60.37 |
| AT2G31160.1 | Thale cress | nucleus | 53.44 | 60.27 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 46.56 | 60.21 |
| Bra009997.1-P | Field mustard | plastid | 46.56 | 59.9 |
| PGSC0003DMT400029945 | Potato | nucleus | 43.72 | 59.02 |
| CDY30000 | Canola | nucleus, plastid | 45.34 | 58.95 |
| CDY21126 | Canola | nucleus, plastid | 45.34 | 58.95 |
| Zm00001d043011_P001 | Maize | nucleus | 49.8 | 58.85 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 42.51 | 58.33 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 44.13 | 57.37 |
| CDX74186 | Canola | nucleus, plastid | 44.13 | 57.37 |
| CDY63294 | Canola | nucleus | 42.51 | 57.07 |
| CDY49331 | Canola | nucleus, plastid | 44.94 | 56.63 |
| CDY42932 | Canola | nucleus, plastid | 44.94 | 56.35 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 45.75 | 56.22 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 44.53 | 55.84 |
| Zm00001d012473_P001 | Maize | nucleus | 46.56 | 55.29 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 45.75 | 54.07 |
| Solyc05g055020.2.1 | Tomato | nucleus | 45.75 | 53.55 |
| Zm00001d015342_P001 | Maize | nucleus | 49.8 | 49.8 |
| Zm00001d038442_P001 | Maize | nucleus | 49.39 | 49.39 |
| Zm00001d010596_P001 | Maize | nucleus | 48.99 | 48.99 |
| Zm00001d046998_P001 | Maize | nucleus | 51.01 | 45.49 |
| Zm00001d036617_P001 | Maize | nucleus | 49.39 | 44.04 |
| Zm00001d018775_P001 | Maize | nucleus | 42.91 | 41.41 |
| Zm00001d038016_P001 | Maize | extracellular | 50.2 | 41.2 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 50.2 | 39.24 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 45.34 | 37.71 |
| Zm00001d036993_P001 | Maize | mitochondrion | 16.19 | 23.12 |
| Zm00001d020559_P001 | Maize | mitochondrion | 8.91 | 10.73 |
Protein Annotations
| EMBL:EU962182 | EMBL:EU968462 | EnsemblPlants:Zm00001d018433_P001 | EnsemblPlants:Zm00001d018433_T001 | EnsemblPlantsGene:Zm00001d018433 | EntrezGene:100276429 |
| InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF7 | PFAM:PF04852 | PFscan:PS51697 |
| ProteinID:AQK75972.1 | SEG:seg | UniParc:UPI000182CC5A | UniProt:B6TB17 | MapMan:35.1 | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Coordinates
chr5:+:220783919..220784662
Molecular Weight (calculated)
25968.3 Da
IEP (calculated)
9.812
GRAVY (calculated)
-0.654
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHHHHHHH HHHHMIPGQE PSATDGAAPD SFFLGPAAAV IFSGGAGAGS SSSGAAALGS SAGGGGGPSP SSSSPSLSRY ESQKRRDWNT FGQYLRNHRP
101: PLSLSRCSGA HVLEFLKYMD QFGKTKVHTP VCPFYGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAYEENG GTPEMNPFGA RAVRLYLREV RETQARARGI
201: SYEKKKRKKP SAASAAAAGP SSEGSPPPGP SSGGGGPDTS SPQFIMP
101: PLSLSRCSGA HVLEFLKYMD QFGKTKVHTP VCPFYGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAYEENG GTPEMNPFGA RAVRLYLREV RETQARARGI
201: SYEKKKRKKP SAASAAAAGP SSEGSPPPGP SSGGGGPDTS SPQFIMP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.