Factsheet for Zm00001d015342_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04579	Sorghum	nucleus	90.69	86.82
TraesCS6D01G129400.1	Wheat	nucleus	75.3	71.81
TraesCS6B01G168300.1	Wheat	nucleus, plastid	75.3	71.54
TraesCS6A01G139700.1	Wheat	nucleus	74.49	71.04
Zm00001d025863_P001	Maize	nucleus	46.96	69.05
Zm00001d046998_P001	Maize	nucleus	74.09	66.06
Zm00001d036617_P001	Maize	nucleus	72.87	64.98
PGSC0003DMT400054474	Potato	plastid	44.53	62.86
Zm00001d014032_P001	Maize	nucleus	52.63	61.9
Solyc02g069510.1.1	Tomato	nucleus	45.34	61.88
Zm00001d017263_P001	Maize	nucleus	50.61	61.27
Zm00001d032696_P001	Maize	nucleus	52.63	61.03
Zm00001d003057_P001	Maize	nucleus	49.39	61.0
Zm00001d051143_P001	Maize	nucleus	48.18	58.91
GSMUA_Achr4P31900_001	Banana	nucleus	44.53	58.51
GSMUA_Achr9P30540_001	Banana	nucleus	43.72	58.38
GSMUA_AchrUn_...	Banana	nucleus	48.99	58.17
GSMUA_Achr5P00260_001	Banana	nucleus	46.56	56.37
Zm00001d043011_P001	Maize	nucleus	46.96	55.5
Zm00001d012473_P001	Maize	nucleus	45.34	53.85
GSMUA_Achr11P...	Banana	nucleus	47.77	53.15
Zm00001d051966_P001	Maize	nucleus	51.01	51.22
KRH58368	Soybean	nucleus	47.77	50.0
Zm00001d018433_P001	Maize	nucleus	49.8	49.8
KRH42251	Soybean	plastid	48.58	48.58
Zm00001d038442_P001	Maize	nucleus	47.77	47.77
Zm00001d010596_P001	Maize	nucleus	46.56	46.56
Zm00001d018775_P001	Maize	nucleus	44.53	42.97
Zm00001d038016_P001	Maize	extracellular	47.37	38.87
Zm00001d010507_P001	Maize	nucleus, plastid	48.18	37.66
Zm00001d036993_P001	Maize	mitochondrion	18.62	26.59
Zm00001d020559_P001	Maize	mitochondrion	8.91	10.73

Protein Annotations

EMBL:BT055415	EnsemblPlants:Zm00001d015342_P001	EnsemblPlants:Zm00001d015342_T001	EnsemblPlantsGene:Zm00001d015342	InterPro:ALOG_dom	InterPro:IPR006936
PANTHER:PTHR31165	PANTHER:PTHR31165:SF39	PFAM:PF04852	PFscan:PS51697	ProteinID:AQK68704.1	SEG:seg
UniParc:UPI000191766A	UniProt:B8A1H3	MapMan:35.1	:	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5

Coordinates

chr5:+:85459453..85460196

Molecular Weight (calculated)

26760.7 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.528

Length

247 amino acids

Sequence
(BLAST)

001: MEVAGVVASA ADSPGAAAAR PSRYESQKRR DWHTFGQYLR NHRPPLELAR CSGAHVLEFL RYLDQFGKTK VHAARCPFFG HPSPPAPCPC PLKQAWGSLD
101: ALVGRLRAAF EEHGGRPEAN PFGARAVRLY LREVRDSQAK ARGIAYEKKR RKRHPPAHRQ PKQQQQQDGQ HQHPSHAAPG TVAEPPAPHF LIPHAHFLHG
201: HFLAPATEPI DPAAGGGGGT GDDIALAMAA AAEAHAAGFL MPLSVFN

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.