Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G129400.1 | Wheat | nucleus | 97.68 | 97.68 |
| TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 97.3 | 96.92 |
| Zm00001d015342_P001 | Maize | nucleus | 71.04 | 74.49 |
| EES04579 | Sorghum | nucleus | 70.27 | 70.54 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 67.95 | 65.67 |
| PGSC0003DMT400054474 | Potato | plastid | 42.86 | 63.43 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 49.03 | 62.87 |
| Solyc02g069510.1.1 | Tomato | nucleus | 43.63 | 62.43 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 47.49 | 61.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.33 | 57.69 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 40.93 | 57.3 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 40.93 | 56.38 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 44.4 | 56.37 |
| TraesCS3A01G348900.1 | Wheat | golgi | 44.79 | 54.72 |
| GSMUA_Achr11P... | Banana | nucleus | 45.56 | 53.15 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 49.42 | 53.11 |
| KRH58368 | Soybean | nucleus | 45.95 | 50.42 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 48.65 | 50.0 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 45.95 | 48.77 |
| KRH42251 | Soybean | plastid | 46.33 | 48.58 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 47.1 | 42.96 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 41.31 | 41.15 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G139700.1 | EnsemblPlantsGene:TraesCS6A01G139700 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF39 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6A:-:114458307..114459086
Molecular Weight (calculated)
27949.3 Da
IEP (calculated)
9.472
GRAVY (calculated)
-0.439
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSGVSAVD SPGGGSASSV LGAPRPSRYE SQKRRDWQTF GQYLRNHRPP LELARCSGAH VLEFLRYLDQ FGKTKVHNAG CPFFGHPSPP APCPCPLKQA
101: WGSLDALVGR LRAAFEEHGG RPEANPFGAR AVRLYLRDVR DGQAKARGIA YEKKRRKRHP QTSSKQKQQA EPASAAASPA PVDRPDMRHG MLEQTHYLFP
201: MHAHLFQGHF LAPAPDGDPV GALDGVVPAG DDIVMVMAAA AAAAEAHAAG CMMPLSVFN
101: WGSLDALVGR LRAAFEEHGG RPEANPFGAR AVRLYLRDVR DGQAKARGIA YEKKRRKRHP QTSSKQKQQA EPASAAASPA PVDRPDMRHG MLEQTHYLFP
201: MHAHLFQGHF LAPAPDGDPV GALDGVVPAG DDIVMVMAAA AAAAEAHAAG CMMPLSVFN
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.