Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G453600.1 | Wheat | nucleus | 98.51 | 98.51 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 97.39 | 97.39 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 94.78 | 94.42 |
| Os06t0672400-01 | Rice | nucleus | 75.0 | 72.56 |
| Zm00001d046998_P001 | Maize | nucleus | 70.52 | 68.23 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 65.67 | 67.95 |
| KXG34092 | Sorghum | nucleus | 70.9 | 67.38 |
| OQU76862 | Sorghum | nucleus | 70.9 | 67.38 |
| Zm00001d036617_P001 | Maize | nucleus | 69.03 | 66.79 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 47.76 | 63.37 |
| PGSC0003DMT400054474 | Potato | plastid | 40.67 | 62.29 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 45.9 | 61.19 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 42.54 | 60.64 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 41.79 | 60.54 |
| Solyc02g069510.1.1 | Tomato | nucleus | 40.67 | 60.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.27 | 59.62 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 45.15 | 59.31 |
| TraesCS3A01G348900.1 | Wheat | golgi | 44.03 | 55.66 |
| GSMUA_Achr11P... | Banana | nucleus | 45.9 | 55.41 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 47.39 | 52.7 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 48.51 | 51.59 |
| KRH58368 | Soybean | nucleus | 44.78 | 50.85 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 45.15 | 49.59 |
| KRH42251 | Soybean | plastid | 44.78 | 48.58 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 46.27 | 43.66 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 41.04 | 42.31 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G466000.1 | EnsemblPlantsGene:TraesCS7A01G466000 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF5 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7A:+:662967047..662967853
Molecular Weight (calculated)
28633.8 Da
IEP (calculated)
9.818
GRAVY (calculated)
-0.545
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGAPVDSPG AAEAAARPSR YESQKRRDWH TFGQYLRNHR PPLELSRCSG AHVLEFLRYL DQFGKTKVHA AGCPFFGHPS PPAPCPCPLR QAWGSLDALV
101: GRLRAAFEEH GGRPEANPFG ARAVRLYLRE VRDSQAKARG IAYEKKRRKR PPPSSSQKAA KAAPSPPPPA STHVAAPPPE SAPEVLVARA VPAQGHYFIP
201: HPQHYMHAHF LMPGGHEADA AVPSSSSGNS NGHSNGQSSG TGDEMAMAMA AAAEAHAAGC MLPLSVFN
101: GRLRAAFEEH GGRPEANPFG ARAVRLYLRE VRDSQAKARG IAYEKKRRKR PPPSSSQKAA KAAPSPPPPA STHVAAPPPE SAPEVLVARA VPAQGHYFIP
201: HPQHYMHAHF LMPGGHEADA AVPSSSSGNS NGHSNGQSSG TGDEMAMAMA AAAEAHAAGC MLPLSVFN
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.