Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76862 | Sorghum | nucleus | 100.0 | 100.0 |
| Zm00001d046998_P001 | Maize | nucleus | 92.91 | 94.58 |
| Zm00001d036617_P001 | Maize | nucleus | 88.3 | 89.89 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 68.44 | 71.75 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 67.73 | 71.27 |
| EES04579 | Sorghum | nucleus | 64.89 | 70.93 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 67.38 | 70.9 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 67.02 | 70.52 |
| Os06t0672400-01 | Rice | nucleus | 69.15 | 70.4 |
| EES11114 | Sorghum | nucleus | 46.1 | 65.33 |
| PGSC0003DMT400054474 | Potato | plastid | 38.65 | 62.29 |
| Solyc02g069510.1.1 | Tomato | nucleus | 39.72 | 61.88 |
| KXG30661 | Sorghum | nucleus | 44.68 | 60.58 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 38.65 | 58.92 |
| KXG38327 | Sorghum | nucleus | 46.45 | 58.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.91 | 58.17 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 38.65 | 57.98 |
| OQU83235 | Sorghum | cytosol | 36.17 | 57.95 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 40.07 | 55.39 |
| OQU87784 | Sorghum | nucleus | 42.2 | 55.35 |
| GSMUA_Achr11P... | Banana | nucleus | 40.78 | 51.8 |
| KRH58368 | Soybean | nucleus | 42.55 | 50.85 |
| EES05986 | Sorghum | nucleus | 43.97 | 49.4 |
| KRH42251 | Soybean | plastid | 42.91 | 48.99 |
| EES18364 | Sorghum | nucleus | 42.91 | 47.08 |
| EER97956 | Sorghum | mitochondrion, nucleus | 41.49 | 41.2 |
| EES19345 | Sorghum | nucleus, plastid | 43.26 | 37.54 |
Protein Annotations
| EnsemblPlants:KXG34092 | EnsemblPlantsGene:SORBI_3003G421300 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF5 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:KXG34092 | ProteinID:KXG34092.1 | ProteinID:OQU76862.1 | SEG:seg |
| UniParc:UPI0003C6B807 | UniProt:A0A1B6Q842 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:72646982..72648792
Molecular Weight (calculated)
30115.3 Da
IEP (calculated)
9.558
GRAVY (calculated)
-0.532
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVGGGAADS PGAAAGAEAP RPSRYESQKR RDWHTFGQYL RNHRPPLELA RCSGAHVLEF LRYLDQFGKT KVHAPGCPFF GHPSPPAPCP CPLRQAWGSL
101: DALVGRLRAA FEEHGGRPEA NPFGARAVRL YLREVRDSQA KARGIAYEKK RRKRPSASSS QSSPQAATTP PQQAPPVSSP ALSDVVAERA DVRAHVPDAG
201: HQQHHHLHQH QHQHHFFMPH PQFLHGFSLL PGNPEAVAAN GNGGGSSSAS VAAGNGDEIA LAMAAAAEAH AAGCMLPLSV FN
101: DALVGRLRAA FEEHGGRPEA NPFGARAVRL YLREVRDSQA KARGIAYEKK RRKRPSASSS QSSPQAATTP PQQAPPVSSP ALSDVVAERA DVRAHVPDAG
201: HQQHHHLHQH QHQHHFFMPH PQFLHGFSLL PGNPEAVAAN GNGGGSSSAS VAAGNGDEIA LAMAAAAEAH AAGCMLPLSV FN
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.