Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032696_P001 | Maize | nucleus | 90.13 | 94.37 |
| GSMUA_Achr11P... | Banana | nucleus | 34.98 | 82.98 |
| Os10t0478000-01 | Rice | nucleus | 75.78 | 82.84 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 75.78 | 82.04 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 75.78 | 82.04 |
| EES11114 | Sorghum | nucleus | 67.26 | 75.38 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 74.44 | 73.13 |
| KXG30661 | Sorghum | nucleus | 68.16 | 73.08 |
| Solyc09g025280.1.1 | Tomato | nucleus | 54.71 | 71.34 |
| Bra023738.1-P | Field mustard | plastid | 55.61 | 70.45 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 57.4 | 69.95 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 75.34 | 69.71 |
| KRH34151 | Soybean | plastid | 54.71 | 69.32 |
| CDY69731 | Canola | plastid | 57.85 | 66.15 |
| CDY35523 | Canola | plastid | 57.85 | 66.15 |
| PGSC0003DMT400026698 | Potato | nucleus | 54.71 | 65.95 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.67 | 65.7 |
| KRG92413 | Soybean | nucleus | 56.5 | 65.62 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 58.74 | 65.17 |
| AT3G23290.2 | Thale cress | plastid | 56.95 | 65.13 |
| KRG97044 | Soybean | plastid | 53.36 | 65.03 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 55.61 | 64.92 |
| KRG92633 | Soybean | nucleus | 55.16 | 64.74 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 49.78 | 64.16 |
| KRH67397 | Soybean | nucleus | 58.3 | 64.04 |
| KRG95674 | Soybean | nucleus | 58.3 | 64.04 |
| Bra014935.1-P | Field mustard | plastid | 56.95 | 63.82 |
| CDX85083 | Canola | plastid | 56.95 | 63.82 |
| CDX77531 | Canola | plastid | 56.95 | 63.82 |
| KRH68792 | Soybean | plastid | 52.02 | 63.04 |
| KRH32192 | Soybean | nucleus | 58.3 | 62.8 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 56.95 | 62.56 |
| PGSC0003DMT400051692 | Potato | nucleus | 58.3 | 62.5 |
| KRH34391 | Soybean | nucleus | 56.5 | 62.38 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 52.91 | 62.11 |
| CDY52479 | Canola | nucleus, plastid | 52.91 | 62.11 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.98 | 61.85 |
| KRH56293 | Soybean | nucleus | 58.3 | 61.61 |
| Solyc09g090180.1.1 | Tomato | plastid | 57.4 | 61.54 |
| CDX86199 | Canola | plastid | 52.91 | 61.46 |
| CDY52505 | Canola | nucleus, plastid | 52.47 | 61.26 |
| CDY05593 | Canola | nucleus, plastid | 52.47 | 61.26 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 47.98 | 61.14 |
| CDY57024 | Canola | nucleus, plastid | 52.47 | 60.94 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 52.02 | 60.73 |
| Solyc06g083860.2.1 | Tomato | nucleus | 59.19 | 60.55 |
| Bra009997.1-P | Field mustard | plastid | 52.02 | 60.42 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 52.02 | 60.42 |
| CDY64755 | Canola | nucleus, plastid | 51.12 | 59.38 |
| CDY63294 | Canola | nucleus | 48.43 | 58.7 |
| CDY24755 | Canola | nucleus, plastid | 56.5 | 58.6 |
| Bra018263.1-P | Field mustard | nucleus | 56.5 | 58.6 |
| CDY10790 | Canola | nucleus | 56.5 | 58.6 |
| CDY15426 | Canola | nucleus | 56.95 | 58.53 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.98 | 58.47 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 49.78 | 58.42 |
| CDX74186 | Canola | nucleus, plastid | 49.78 | 58.42 |
| CDY57088 | Canola | nucleus | 56.5 | 58.06 |
| CDY57087 | Canola | nucleus | 56.5 | 58.06 |
| Bra021707.1-P | Field mustard | nucleus | 56.5 | 58.06 |
| AT2G31160.1 | Thale cress | nucleus | 56.95 | 57.99 |
| PGSC0003DMT400029945 | Potato | nucleus | 47.53 | 57.92 |
| CDY21126 | Canola | nucleus, plastid | 49.33 | 57.89 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 46.64 | 57.78 |
| CDY30000 | Canola | nucleus, plastid | 48.88 | 57.37 |
| OQU83235 | Sorghum | cytosol | 44.84 | 56.82 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 50.67 | 56.22 |
| CDY49331 | Canola | nucleus, plastid | 49.33 | 56.12 |
| CDY42932 | Canola | nucleus, plastid | 49.33 | 55.84 |
| OQU87784 | Sorghum | nucleus | 53.81 | 55.81 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 48.88 | 55.33 |
| EES05986 | Sorghum | nucleus | 61.44 | 54.58 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 50.22 | 53.59 |
| Solyc05g055020.2.1 | Tomato | nucleus | 50.22 | 53.08 |
| EES04579 | Sorghum | nucleus | 56.95 | 49.22 |
| OQU76862 | Sorghum | nucleus | 58.74 | 46.45 |
| KXG34092 | Sorghum | nucleus | 58.74 | 46.45 |
| EES18364 | Sorghum | nucleus | 51.57 | 44.75 |
| EER97956 | Sorghum | mitochondrion, nucleus | 48.43 | 38.03 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 49.33 | 37.04 |
| EES19345 | Sorghum | nucleus, plastid | 53.81 | 36.92 |
Protein Annotations
| EnsemblPlants:KXG38327 | EnsemblPlantsGene:SORBI_3001G219400 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF15 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:KXG38327 | ProteinID:KXG38327.1 | SEG:seg | UniParc:UPI0003C712FF |
| UniProt:A0A1B6QK86 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:20561567..20562732
Molecular Weight (calculated)
23615.7 Da
IEP (calculated)
10.132
GRAVY (calculated)
-0.662
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLIPHPDSP HSDNSGGVGG GGGGGGVGSV SGALSPAGAS SAGAVSALAS PSRYESQKRR DWNTFGQYLR NHRPPLSLAR CSGAHVLEFL RYLDQFGKTK
101: VHTPACPFFG HPAPPAPCPC PLRQAWGSLD ALVGRLRAAY EENGGRPENN PFGARAVRLY LREVRDHQSR ARGVSYEKKK RKKAPAHPVP AAVISSSSSH
201: DGNGHHHYEH HQMPPPPPPG AAA
101: VHTPACPFFG HPAPPAPCPC PLRQAWGSLD ALVGRLRAAY EENGGRPENN PFGARAVRLY LREVRDHQSR ARGVSYEKKK RKKAPAHPVP AAVISSSSSH
201: DGNGHHHYEH HQMPPPPPPG AAA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.