Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018337.1-P | Field mustard | cytosol | 53.41 | 56.97 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 52.84 | 56.36 |
| CDY32697 | Canola | nucleus | 56.25 | 55.93 |
| CDY59510 | Canola | nucleus | 56.25 | 54.7 |
| Bra020365.1-P | Field mustard | nucleus | 56.25 | 54.7 |
| CDY02038 | Canola | cytosol | 50.57 | 54.27 |
| AT1G07090.1 | Thale cress | nucleus | 60.23 | 54.08 |
| AT5G58500.1 | Thale cress | nucleus | 55.68 | 53.85 |
| CDY06675 | Canola | nucleus, plastid | 59.09 | 52.53 |
| CDY10247 | Canola | nucleus, plastid | 59.09 | 52.53 |
| CDY32977 | Canola | nucleus, plastid | 54.55 | 52.46 |
| CDY61050 | Canola | nucleus | 54.55 | 52.46 |
| CDY09940 | Canola | nucleus | 58.52 | 52.02 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 58.52 | 52.02 |
| CDY20312 | Canola | nucleus | 58.52 | 52.02 |
| CDX94980 | Canola | nucleus | 58.52 | 52.02 |
| CDY52287 | Canola | nucleus | 58.52 | 52.02 |
| CDY59064 | Canola | nucleus | 58.52 | 52.02 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 53.98 | 51.91 |
| EES11114 | Sorghum | nucleus | 58.52 | 51.76 |
| Bra031552.1-P | Field mustard | nucleus | 57.95 | 51.52 |
| OQU87784 | Sorghum | nucleus | 62.5 | 51.16 |
| KRH17088 | Soybean | nucleus | 61.36 | 49.54 |
| KXG30661 | Sorghum | nucleus | 58.52 | 49.52 |
| KRG98226 | Soybean | nucleus | 64.77 | 49.14 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 63.64 | 48.48 |
| KRH72732 | Soybean | nucleus | 60.23 | 48.4 |
| Solyc06g082210.1.1 | Tomato | nucleus | 60.8 | 48.2 |
| KRH30185 | Soybean | nucleus | 64.2 | 48.09 |
| PGSC0003DMT400078091 | Potato | nucleus | 60.8 | 47.98 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 50.57 | 47.59 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 49.43 | 46.52 |
| KXG38327 | Sorghum | nucleus | 56.82 | 44.84 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 72.16 | 44.72 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 72.16 | 44.72 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 71.59 | 44.52 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 53.41 | 44.34 |
| EES18364 | Sorghum | nucleus | 64.2 | 43.97 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 71.02 | 43.71 |
| Os05t0347400-01 | Rice | nucleus | 69.89 | 43.31 |
| Zm00001d038016_P001 | Maize | extracellular | 72.16 | 42.19 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 73.86 | 41.14 |
| EES05986 | Sorghum | nucleus | 58.52 | 41.04 |
| EES19345 | Sorghum | nucleus, plastid | 74.43 | 40.31 |
| EES04579 | Sorghum | nucleus | 56.82 | 38.76 |
| OQU76862 | Sorghum | nucleus | 57.95 | 36.17 |
| KXG34092 | Sorghum | nucleus | 57.95 | 36.17 |
| EER97956 | Sorghum | mitochondrion, nucleus | 51.7 | 32.04 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 50.0 | 30.99 |
Protein Annotations
| EnsemblPlants:OQU83235 | EnsemblPlantsGene:SORBI_3005G094266 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:OQU83235 | ProteinID:OQU83235.1 | SEG:seg | UniParc:UPI000B8BA59B |
| UniProt:A0A1Z5RIH5 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:14745035..14745562
Molecular Weight (calculated)
19374.2 Da
IEP (calculated)
9.441
GRAVY (calculated)
-0.432
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: AQPQPLAQQP LVPSPLGLSR YESQKWRDWN TFLQYLQNHR PPLKLACCTG AHVIEFLRYL DQFGKTRVHL EGCDYFGQPN PPVPCACPLR QAWGSLDALI
101: GRLRAGYEEF GGRPESNPFM AKDVRIYLRD VREAQAKASG ISYVKKKPKH GSTAASPVAP PPVVTAETAG TMSGAA
101: GRLRAGYEEF GGRPESNPFM AKDVRIYLRD VREAQAKASG ISYVKKKPKH GSTAASPVAP PPVVTAETAG TMSGAA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.