Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038442_P001 | Maize | nucleus | 84.05 | 87.45 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 67.32 | 74.57 |
| Os05t0472000-00 | Rice | nucleus | 66.93 | 72.27 |
| OQU87784 | Sorghum | nucleus | 60.31 | 72.09 |
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 64.98 | 71.67 |
| TraesCS1B01G305800.1 | Wheat | nucleus | 65.37 | 70.59 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 64.2 | 67.62 |
| OQU83235 | Sorghum | cytosol | 43.97 | 64.2 |
| GSMUA_Achr11P... | Banana | nucleus | 42.41 | 61.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.8 | 59.14 |
| EES11114 | Sorghum | nucleus | 45.14 | 58.29 |
| KXG30661 | Sorghum | nucleus | 46.69 | 57.69 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 42.02 | 52.17 |
| KXG38327 | Sorghum | nucleus | 44.75 | 51.57 |
| GSMUA_Achr11P... | Banana | nucleus | 38.91 | 49.26 |
| EES05986 | Sorghum | nucleus | 47.86 | 49.0 |
| EES19345 | Sorghum | nucleus, plastid | 60.31 | 47.69 |
| EES04579 | Sorghum | nucleus | 45.91 | 45.74 |
| OQU76862 | Sorghum | nucleus | 47.08 | 42.91 |
| KXG34092 | Sorghum | nucleus | 47.08 | 42.91 |
| EER97956 | Sorghum | mitochondrion, nucleus | 41.25 | 37.32 |
Protein Annotations
| EnsemblPlants:EES18364 | EnsemblPlantsGene:SORBI_3009G170100 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:EES18364 | ProteinID:EES18364.2 | SEG:seg | unigene:Sbi.3395 |
| UniParc:UPI00081AE464 | UniProt:C5YZD6 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:52581408..52582181
Molecular Weight (calculated)
26705.0 Da
IEP (calculated)
10.212
GRAVY (calculated)
-0.703
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSGPAAGP SSSAARGGGD DDAHAPPPPQ QQHHQVQPLA QAQPQQAAAA QPHQAPPPPQ QQLSRYESQK RRDWNTFLQY LRNHRPPLTL ARCSGAHVIE
101: FLKYLDQFGK TKVHAAGCAY FGQPNPPAPC PCPLRQAWGS LDALIGRLRA AYEESGHAPE SNPFAARAVR IYLRDVRDAQ AKARGIPYEK KSRKRKQPAA
201: GSGEASSSSA AAAAREAGAA GDGSGGSAAA TKAAPTTGQG SGTTAAAAAA PTSTSRV
101: FLKYLDQFGK TKVHAAGCAY FGQPNPPAPC PCPLRQAWGS LDALIGRLRA AYEESGHAPE SNPFAARAVR IYLRDVRDAQ AKARGIPYEK KSRKRKQPAA
201: GSGEASSSSA AAAAREAGAA GDGSGGSAAA TKAAPTTGQG SGTTAAAAAA PTSTSRV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.