CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043011_P001	Maize	nucleus	91.16	93.78
Os01t0828900-00	Rice	nucleus, plastid	80.93	82.08
Zm00001d012473_P001	Maize	nucleus	77.67	80.29
TraesCS3A01G348900.1	Wheat	golgi	69.3	70.28
TraesCS3B01G381000.1	Wheat	cytosol, nucleus, plastid	69.3	70.28
TraesCS3D01G342800.1	Wheat	cytosol, nucleus, plastid	69.3	70.28
HORVU3Hr1G088000.2	Barley	plastid	66.98	62.88
OQU83235	Sorghum	cytosol	51.16	62.5
GSMUA_Achr11P...	Banana	nucleus	50.7	61.93
GSMUA_AchrUn_...	Banana	nucleus	53.49	61.83
EES18364	Sorghum	nucleus	72.09	60.31
EES11114	Sorghum	nucleus	53.95	58.29
KXG30661	Sorghum	nucleus	55.81	57.69
KXG38327	Sorghum	nucleus	55.81	53.81
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	51.63	53.62
EES05986	Sorghum	nucleus	57.67	49.4
GSMUA_Achr11P...	Banana	nucleus	45.58	48.28
EES04579	Sorghum	nucleus	54.42	45.35
EES19345	Sorghum	nucleus, plastid	68.37	45.23
OQU76862	Sorghum	nucleus	55.35	42.2
KXG34092	Sorghum	nucleus	55.35	42.2
EER97956	Sorghum	mitochondrion, nucleus	48.37	36.62
Zm00001d036993_P001	Maize	mitochondrion	24.65	30.64
Zm00001d020559_P001	Maize	mitochondrion	10.23	10.73

Protein Annotations

MapMan:35.1	EntrezGene:8057742	InterPro:ALOG_dom	UniProt:C5XNY2	ProteinID:EES03824.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936
ProteinID:OQU87781.1	ProteinID:OQU87782.1	ProteinID:OQU87783.1	EnsemblPlants:OQU87784	ProteinID:OQU87784	ProteinID:OQU87784.1
PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF18	EnsemblPlantsGene:SORBI_3003G342600	UniParc:UPI0001A8586A
RefSeq:XP_002458704.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:66482248..66486516

Molecular Weight (calculated)

22249.1 Da

IEP (calculated)

10.437

GRAVY (calculated)

-0.509

Length

215 amino acids

Sequence
(BLAST)

001: MDPSGPGPSS VMGAAGGGEA PAVAPPRPAQ LSRYESQKRR DWNTFLQYLR NHRPPLTLAR CSGAHVIEFL RYLDQFGKTK VHAAGCAYYG QPAPPGPCPC
101: PLRQAWGSLD ALIGRLRAAY EESGGTPESN PFAARAVRIY LREVRDSQAK ARGIPYEKKK RKRAQQQQAA AAADPASTSS SAAAAGGSGT SGRAAAAAAA
201: SAAQAGGSSA APSTT

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.