Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020559_P001 | Maize | mitochondrion | 47.98 | 40.49 |
| Zm00001d012473_P001 | Maize | nucleus | 30.64 | 25.48 |
| Zm00001d043011_P001 | Maize | nucleus | 30.64 | 25.36 |
| OQU87784 | Sorghum | nucleus | 30.64 | 24.65 |
| Os01t0828900-00 | Rice | nucleus, plastid | 30.06 | 24.53 |
| Zm00001d025863_P001 | Maize | nucleus | 23.12 | 23.81 |
| GSMUA_Achr11P... | Banana | nucleus | 23.7 | 23.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.86 | 23.12 |
| TraesCS3A01G348900.1 | Wheat | golgi | 28.32 | 23.11 |
| TraesCS3B01G381000.1 | Wheat | cytosol, nucleus, plastid | 28.32 | 23.11 |
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 27.75 | 22.64 |
| Zm00001d051143_P001 | Maize | nucleus | 25.43 | 21.78 |
| Zm00001d017263_P001 | Maize | nucleus | 25.43 | 21.57 |
| Zm00001d003057_P001 | Maize | nucleus | 24.86 | 21.5 |
| Zm00001d038442_P001 | Maize | nucleus | 30.06 | 21.05 |
| Zm00001d032696_P001 | Maize | nucleus | 25.43 | 20.66 |
| Zm00001d010596_P001 | Maize | nucleus | 29.48 | 20.65 |
| HORVU3Hr1G088000.2 | Barley | plastid | 27.17 | 20.52 |
| Zm00001d014032_P001 | Maize | nucleus | 24.86 | 20.48 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 23.12 | 19.32 |
| GSMUA_Achr11P... | Banana | nucleus | 21.97 | 18.72 |
| Zm00001d015342_P001 | Maize | nucleus | 26.59 | 18.62 |
| Zm00001d038016_P001 | Maize | extracellular | 30.06 | 17.28 |
| Zm00001d051966_P001 | Maize | nucleus | 24.28 | 17.07 |
| Zm00001d036617_P001 | Maize | nucleus | 27.17 | 16.97 |
| Zm00001d046998_P001 | Maize | nucleus | 27.17 | 16.97 |
| Zm00001d018433_P001 | Maize | nucleus | 23.12 | 16.19 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 28.9 | 15.82 |
| Zm00001d018775_P001 | Maize | nucleus | 21.97 | 14.84 |
Protein Annotations
| EnsemblPlants:Zm00001d036993_P001 | EnsemblPlants:Zm00001d036993_T001 | EnsemblPlantsGene:Zm00001d036993 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF18 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK82598.1 | UniParc:UPI000843D219 | UniProt:A0A1D6LT55 |
| MapMan:35.1 | : | : | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr6:+:108514117..108515979
Molecular Weight (calculated)
19208.4 Da
IEP (calculated)
9.549
GRAVY (calculated)
-0.040
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQRPCHIGP RCGSGDTVIL LHVRPTSVLY GADWSDIDVS YPSLAPTPRM ALAMAVTTQS PLLCAGWRTT KTPSRPLEGE SFHFYHALFK VSLLLIKAAR
101: GSMPPLRSAV RQSQSLVLSF CDLSRPILRN HRPPLTLARC SDAHVIEFLR YLDQFGKTKV HAAGCADYAY TIE
101: GSMPPLRSAV RQSQSLVLSF CDLSRPILRN HRPPLTLARC SDAHVIEFLR YLDQFGKTKV HAAGCADYAY TIE
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.