Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043011_P001 | Maize | nucleus | 79.33 | 78.95 |
| OQU87784 | Sorghum | nucleus | 80.29 | 77.67 |
| Os01t0828900-00 | Rice | nucleus, plastid | 73.08 | 71.7 |
| TraesCS3B01G381000.1 | Wheat | cytosol, nucleus, plastid | 64.9 | 63.68 |
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 64.9 | 63.68 |
| TraesCS3A01G348900.1 | Wheat | golgi | 64.9 | 63.68 |
| Zm00001d010596_P001 | Maize | nucleus | 75.0 | 63.16 |
| Zm00001d025863_P001 | Maize | nucleus | 50.48 | 62.5 |
| Zm00001d038442_P001 | Maize | nucleus | 72.12 | 60.73 |
| GSMUA_Achr11P... | Banana | nucleus | 50.48 | 59.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.88 | 59.14 |
| HORVU3Hr1G088000.2 | Barley | plastid | 63.46 | 57.64 |
| Zm00001d003057_P001 | Maize | nucleus | 52.88 | 55.0 |
| Zm00001d051143_P001 | Maize | nucleus | 53.37 | 54.95 |
| Zm00001d014032_P001 | Maize | nucleus | 54.81 | 54.29 |
| Zm00001d017263_P001 | Maize | nucleus | 52.88 | 53.92 |
| Zm00001d032696_P001 | Maize | nucleus | 54.81 | 53.52 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 50.96 | 51.21 |
| Zm00001d051966_P001 | Maize | nucleus | 55.29 | 46.75 |
| Zm00001d018433_P001 | Maize | nucleus | 55.29 | 46.56 |
| Zm00001d015342_P001 | Maize | nucleus | 53.85 | 45.34 |
| GSMUA_Achr11P... | Banana | nucleus | 44.23 | 45.32 |
| Zm00001d038016_P001 | Maize | extracellular | 63.94 | 44.19 |
| Zm00001d046998_P001 | Maize | nucleus | 56.73 | 42.6 |
| Zm00001d036617_P001 | Maize | nucleus | 56.25 | 42.24 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 62.5 | 41.14 |
| Zm00001d018775_P001 | Maize | nucleus | 47.6 | 38.67 |
| Zm00001d036993_P001 | Maize | mitochondrion | 25.48 | 30.64 |
| Zm00001d020559_P001 | Maize | mitochondrion | 10.1 | 10.24 |
Protein Annotations
| EnsemblPlants:Zm00001d012473_P001 | EnsemblPlants:Zm00001d012473_T001 | EnsemblPlantsGene:Zm00001d012473 | EntrezGene:103636537 | InterPro:ALOG_dom | InterPro:IPR006936 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK99610.1 | SEG:seg |
| UniParc:UPI000220BBAE | UniProt:K7W3J5 | MapMan:35.1 | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
Coordinates
chr8:+:175094482..175095108
Molecular Weight (calculated)
22050.9 Da
IEP (calculated)
10.552
GRAVY (calculated)
-0.594
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSGPGPSS VIGAAGGDEA AAVALQRPAQ LSRYESQKRR DWNTFLQYLR NHRPPLTLAR CSGAHVIEFL RYLDQFGKTK VHAAGCAYYG QRAPPGPCPC
101: PLRQAWGSLD ALIGRLRAAY EESGRTPESN PLAARAVRIY LREVRDSQAK ARGIPYEKKT KRKRAQQQAT EPSTSSSDAA AGSGRARAAA AAASAAQAGG
201: SSAAPSST
101: PLRQAWGSLD ALIGRLRAAY EESGRTPESN PLAARAVRIY LREVRDSQAK ARGIPYEKKT KRKRAQQQAT EPSTSSSDAA AGSGRARAAA AAASAAQAGG
201: SSAAPSST
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.