Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11114 | Sorghum | nucleus | 98.0 | 98.49 |
| Zm00001d025863_P001 | Maize | nucleus | 80.5 | 95.83 |
| GSMUA_Achr11P... | Banana | nucleus | 39.5 | 84.04 |
| Zm00001d051143_P001 | Maize | nucleus | 82.5 | 81.68 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 82.0 | 81.19 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 82.0 | 81.19 |
| Zm00001d017263_P001 | Maize | nucleus | 82.5 | 80.88 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 80.5 | 80.5 |
| Os02t0623400-00 | Rice | nucleus | 83.0 | 79.43 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 81.0 | 79.41 |
| Zm00001d014032_P001 | Maize | nucleus | 74.5 | 70.95 |
| Bra023738.1-P | Field mustard | plastid | 61.5 | 69.89 |
| KRH34151 | Soybean | plastid | 61.5 | 69.89 |
| Solyc09g025280.1.1 | Tomato | nucleus | 59.5 | 69.59 |
| Zm00001d032696_P001 | Maize | nucleus | 74.0 | 69.48 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 63.5 | 69.4 |
| KRG92413 | Soybean | nucleus | 64.0 | 66.67 |
| KRG97044 | Soybean | plastid | 60.5 | 66.12 |
| KRG92633 | Soybean | nucleus | 62.5 | 65.79 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 66.0 | 65.67 |
| CDY69731 | Canola | plastid | 64.0 | 65.64 |
| CDY35523 | Canola | plastid | 64.0 | 65.64 |
| PGSC0003DMT400026698 | Potato | nucleus | 60.5 | 65.41 |
| KRH67397 | Soybean | nucleus | 66.0 | 65.02 |
| KRG95674 | Soybean | nucleus | 66.0 | 65.02 |
| KRH34391 | Soybean | nucleus | 65.5 | 64.85 |
| AT3G23290.2 | Thale cress | plastid | 63.0 | 64.62 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 61.5 | 64.4 |
| KRH68792 | Soybean | plastid | 59.0 | 64.13 |
| Bra014935.1-P | Field mustard | plastid | 63.5 | 63.82 |
| CDX85083 | Canola | plastid | 63.5 | 63.82 |
| CDX77531 | Canola | plastid | 63.5 | 63.82 |
| KRH32192 | Soybean | nucleus | 65.5 | 63.28 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.5 | 62.21 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 59.0 | 62.11 |
| CDY52479 | Canola | nucleus, plastid | 59.0 | 62.11 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 63.0 | 62.07 |
| CDX86199 | Canola | plastid | 59.5 | 61.98 |
| CDY57024 | Canola | nucleus, plastid | 59.0 | 61.46 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 53.0 | 61.27 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 53.0 | 61.27 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 58.5 | 61.26 |
| KRH56293 | Soybean | nucleus | 64.5 | 61.14 |
| Solyc09g090180.1.1 | Tomato | plastid | 63.5 | 61.06 |
| Bra009997.1-P | Field mustard | plastid | 58.5 | 60.94 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 58.5 | 60.94 |
| CDY05593 | Canola | nucleus, plastid | 58.0 | 60.73 |
| CDY52505 | Canola | nucleus, plastid | 58.0 | 60.73 |
| CDY64755 | Canola | nucleus, plastid | 57.5 | 59.9 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 52.0 | 59.43 |
| PGSC0003DMT400051692 | Potato | nucleus | 61.5 | 59.13 |
| CDY63294 | Canola | nucleus | 53.5 | 58.15 |
| PGSC0003DMT400029945 | Potato | nucleus | 53.0 | 57.92 |
| CDY21126 | Canola | nucleus, plastid | 55.0 | 57.89 |
| CDY10790 | Canola | nucleus | 62.0 | 57.67 |
| Bra018263.1-P | Field mustard | nucleus | 62.0 | 57.67 |
| CDY30000 | Canola | nucleus, plastid | 54.5 | 57.37 |
| CDX74186 | Canola | nucleus, plastid | 54.5 | 57.37 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 54.5 | 57.37 |
| Solyc06g083860.2.1 | Tomato | nucleus | 62.5 | 57.34 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 51.5 | 57.22 |
| CDY24755 | Canola | nucleus, plastid | 61.5 | 57.21 |
| Bra021707.1-P | Field mustard | nucleus | 62.0 | 57.14 |
| CDY15426 | Canola | nucleus | 62.0 | 57.14 |
| CDY57087 | Canola | nucleus | 62.0 | 57.14 |
| CDY57088 | Canola | nucleus | 62.0 | 57.14 |
| AT2G31160.1 | Thale cress | nucleus | 62.5 | 57.08 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 52.0 | 56.83 |
| CDY49331 | Canola | nucleus, plastid | 55.5 | 56.63 |
| CDY42932 | Canola | nucleus, plastid | 55.5 | 56.35 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 56.5 | 56.22 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 55.0 | 55.84 |
| Zm00001d043011_P001 | Maize | nucleus | 58.0 | 55.5 |
| Zm00001d051966_P001 | Maize | nucleus | 68.0 | 55.28 |
| Zm00001d018433_P001 | Maize | nucleus | 68.0 | 55.06 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 56.0 | 53.59 |
| Solyc05g055020.2.1 | Tomato | nucleus | 56.5 | 53.55 |
| Zm00001d012473_P001 | Maize | nucleus | 55.0 | 52.88 |
| Zm00001d015342_P001 | Maize | nucleus | 61.0 | 49.39 |
| Zm00001d038442_P001 | Maize | nucleus | 57.5 | 46.56 |
| Zm00001d046998_P001 | Maize | nucleus | 64.0 | 46.21 |
| Zm00001d036617_P001 | Maize | nucleus | 63.5 | 45.85 |
| Zm00001d010596_P001 | Maize | nucleus | 56.0 | 45.34 |
| Zm00001d038016_P001 | Maize | extracellular | 61.5 | 40.86 |
| Zm00001d018775_P001 | Maize | nucleus | 51.0 | 39.84 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 60.0 | 37.97 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 55.0 | 37.04 |
| Zm00001d036993_P001 | Maize | mitochondrion | 21.5 | 24.86 |
| Zm00001d020559_P001 | Maize | mitochondrion | 10.0 | 9.76 |
Protein Annotations
| EnsemblPlants:Zm00001d003057_P001 | EnsemblPlants:Zm00001d003057_T001 | EnsemblPlantsGene:Zm00001d003057 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF12 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:ONM15961.1 | SEG:seg | UniParc:UPI000220FEF1 |
| UniProt:A0A096SG48 | MapMan:35.1 | : | : | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Coordinates
chr2:+:30670978..30671580
Molecular Weight (calculated)
21500.3 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.825
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSPNPDSP SSGGGNGIGP SSGGASPSVG SMTPQSPSRY EAQKRRDWNT FGQYLRNHRP PLSLAQCSGA HVLEFLRYLD QFGKTKVHGP ACPFFGHPNP
101: PAPCPCPLRQ AWGSLDALVG RLRAAFEENG GRPESNPFAA RAVRLYLREV REHQARARGV SYEKKKRKKP QQLQGDSSGG LHGHAHQPPP PPPPPAGAAC
101: PAPCPCPLRQ AWGSLDALVG RLRAAFEENG GRPESNPFAA RAVRLYLREV REHQARARGV SYEKKKRKKP QQLQGDSSGG LHGHAHQPPP PPPPPAGAAC
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.