Factsheet for Zm00001d017263_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051143_P001	Maize	nucleus	92.16	93.07
Zm00001d025863_P001	Maize	nucleus	71.08	86.31
GSMUA_Achr11P...	Banana	nucleus	38.73	84.04
Zm00001d003057_P001	Maize	nucleus	80.88	82.5
Bra023738.1-P	Field mustard	plastid	60.78	70.45
Solyc09g025280.1.1	Tomato	nucleus	58.82	70.18
Zm00001d014032_P001	Maize	nucleus	71.57	69.52
VIT_07s0005g03530.t01	Wine grape	nucleus	62.25	69.4
Zm00001d032696_P001	Maize	nucleus	72.06	69.01
KRH34151	Soybean	plastid	58.82	68.18
KRG92413	Soybean	nucleus	62.75	66.67
KRG97044	Soybean	plastid	59.8	66.67
CDY69731	Canola	plastid	63.24	66.15
CDY35523	Canola	plastid	63.24	66.15
AT3G23290.2	Thale cress	plastid	62.75	65.64
VIT_05s0049g01170.t01	Wine grape	nucleus	64.22	65.17
KRH68792	Soybean	plastid	58.33	64.67
KRH34391	Soybean	nucleus	63.73	64.36
PGSC0003DMT400026698	Potato	nucleus	58.33	64.32
CDX77531	Canola	plastid	62.75	64.32
CDX85083	Canola	plastid	62.75	64.32
Bra014935.1-P	Field mustard	plastid	62.75	64.32
KRG92633	Soybean	nucleus	59.8	64.21
KRH67397	Soybean	nucleus	63.24	63.55
KRG95674	Soybean	nucleus	63.24	63.55
PGSC0003DMT400044213	Potato	mitochondrion	62.25	62.56
KRH32192	Soybean	nucleus	63.24	62.32
VIT_14s0036g00540.t01	Wine grape	plastid	58.33	62.3
Solyc09g090180.1.1	Tomato	plastid	63.24	62.02
AT5G28490.1	Thale cress	nucleus, plastid	57.35	61.58
CDY52479	Canola	nucleus, plastid	57.35	61.58
CDX86199	Canola	plastid	57.84	61.46
GSMUA_Achr5P18640_001	Banana	nucleus	51.47	61.05
KRH56293	Soybean	nucleus	62.75	60.66
Bra009997.1-P	Field mustard	plastid	56.86	60.42
CDY57024	Canola	nucleus, plastid	56.86	60.42
GSMUA_Achr5P03870_001	Banana	nucleus	50.98	60.12
GSMUA_Achr5P14570_001	Banana	nucleus	50.98	60.12
Bra036134.1-P	Field mustard	nucleus, plastid	56.37	59.9
Bra020610.1-P	Field mustard	nucleus, plastid	55.88	59.69
PGSC0003DMT400051692	Potato	nucleus	60.78	59.62
CDY64755	Canola	nucleus, plastid	55.88	59.38
CDY52505	Canola	nucleus, plastid	55.39	59.16
CDY05593	Canola	nucleus, plastid	55.39	59.16
CDY63294	Canola	nucleus	52.94	58.7
Solyc06g083860.2.1	Tomato	nucleus	62.25	58.26
Bra001109.1-P	Field mustard	nucleus, plastid	53.92	57.89
CDX74186	Canola	nucleus, plastid	53.92	57.89
GSMUA_Achr4P21940_001	Banana	nucleus	49.51	57.71
CDY21126	Canola	nucleus, plastid	52.45	56.32
PGSC0003DMT400029945	Potato	nucleus	50.49	56.28
Bra018263.1-P	Field mustard	nucleus	59.31	56.28
CDY10790	Canola	nucleus	59.31	56.28
CDY24755	Canola	nucleus, plastid	59.31	56.28
CDY30000	Canola	nucleus, plastid	51.96	55.79
CDY57087	Canola	nucleus	59.31	55.76
Bra021707.1-P	Field mustard	nucleus	59.31	55.76
CDY15426	Canola	nucleus	59.31	55.76
CDY57088	Canola	nucleus	59.31	55.76
GSMUA_Achr4P28760_001	Banana	nucleus	50.0	55.74
Zm00001d051966_P001	Maize	nucleus	67.16	55.69
CDY49331	Canola	nucleus, plastid	53.43	55.61
Solyc04g009980.2.1	Tomato	nucleus, plastid	49.02	55.56
Zm00001d043011_P001	Maize	nucleus	56.86	55.5
CDY42932	Canola	nucleus, plastid	53.43	55.33
AT2G31160.1	Thale cress	nucleus	59.31	55.25
AT3G04510.1	Thale cress	nucleus, plastid	54.41	55.22
Bra040188.1-P	Field mustard	nucleus, plastid	52.94	54.82
Zm00001d018433_P001	Maize	nucleus	65.2	53.85
Zm00001d012473_P001	Maize	nucleus	53.92	52.88
PGSC0003DMT400060169	Potato	nucleus, plastid	52.94	51.67
Solyc05g055020.2.1	Tomato	nucleus	53.43	51.66
Zm00001d015342_P001	Maize	nucleus	61.27	50.61
Zm00001d046998_P001	Maize	nucleus	63.73	46.93
Zm00001d010596_P001	Maize	nucleus	56.37	46.56
Zm00001d036617_P001	Maize	nucleus	62.75	46.21
Zm00001d038442_P001	Maize	nucleus	54.9	45.34
Zm00001d038016_P001	Maize	extracellular	61.76	41.86
Zm00001d018775_P001	Maize	nucleus	49.51	39.45
Zm00001d010507_P001	Maize	nucleus, plastid	60.29	38.92
Bra040137.1-P	Field mustard	nucleus, plastid	52.45	36.03
Zm00001d036993_P001	Maize	mitochondrion	21.57	25.43
Zm00001d020559_P001	Maize	mitochondrion	10.29	10.24

Protein Annotations

EMBL:EU975109	EnsemblPlants:Zm00001d017263_P001	EnsemblPlants:Zm00001d017263_T001	EnsemblPlantsGene:Zm00001d017263	EntrezGene:100278742	InterPro:ALOG_dom
InterPro:IPR006936	PANTHER:PTHR31165	PANTHER:PTHR31165:SF12	PFAM:PF04852	PFscan:PS51697	ProteinID:AQK72748.1
SEG:seg	UniParc:UPI000182FCDD	UniProt:B6UCZ4	MapMan:35.1	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3

Coordinates

chr5:-:190974697..190975311

Molecular Weight (calculated)

21309.9 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.804

Length

204 amino acids

Sequence
(BLAST)

001: MDLPPNPESP GGGGDGGGGG GAGGSSGGAS SSAPGGGTPQ TPSRYEAQKR RDWNTFGQYL RNHRPPLSLA QCSGAHVLEF LRYLDQFGKT KVHTAACPFF
101: GHPSPPAPCP CPLRQAWGSL DALVGRLRAA FEENGGRPES NPFAARAVRL YLREVREHQA RARGVSYEKK KRKKPQPADH ASGSGGQGPH HPPPPAPPPA
201: GAAC

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.