Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- plastid 4
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | CDX84366 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | CDY00336 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009997.1-P | Field mustard | plastid | 98.96 | 98.96 |
| CDY52479 | Canola | nucleus, plastid | 95.83 | 96.84 |
| CDY57024 | Canola | nucleus, plastid | 93.23 | 93.23 |
| CDY64755 | Canola | nucleus, plastid | 92.71 | 92.71 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 90.62 | 91.58 |
| CDY05593 | Canola | nucleus, plastid | 89.58 | 90.05 |
| CDY52505 | Canola | nucleus, plastid | 89.06 | 89.53 |
| CDY42932 | Canola | nucleus, plastid | 78.65 | 76.65 |
| CDY49331 | Canola | nucleus, plastid | 78.12 | 76.53 |
| CDX74186 | Canola | nucleus, plastid | 75.0 | 75.79 |
| GSMUA_Achr11P... | Banana | nucleus | 35.94 | 73.4 |
| CDY63294 | Canola | nucleus | 70.31 | 73.37 |
| CDY21126 | Canola | nucleus, plastid | 72.4 | 73.16 |
| CDY30000 | Canola | nucleus, plastid | 71.35 | 72.11 |
| KRH34151 | Soybean | plastid | 64.58 | 70.45 |
| Zm00001d025863_P001 | Maize | nucleus | 60.94 | 69.64 |
| KRG97044 | Soybean | plastid | 63.02 | 66.12 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 65.1 | 65.44 |
| KRG92633 | Soybean | nucleus | 63.54 | 64.21 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 54.69 | 63.64 |
| KRH68792 | Soybean | plastid | 60.94 | 63.59 |
| CDY69731 | Canola | plastid | 64.06 | 63.08 |
| CDY35523 | Canola | plastid | 63.54 | 62.56 |
| CDY02038 | Canola | cytosol | 52.6 | 61.59 |
| CDX77531 | Canola | plastid | 63.02 | 60.8 |
| CDX85083 | Canola | plastid | 63.02 | 60.8 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 65.1 | 59.81 |
| EES11114 | Sorghum | nucleus | 61.98 | 59.8 |
| Zm00001d003057_P001 | Maize | nucleus | 61.98 | 59.5 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.73 | 59.44 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 60.94 | 58.79 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 52.6 | 58.72 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 60.94 | 58.5 |
| Os04t0516200-01 | Rice | nucleus | 61.46 | 58.42 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 61.46 | 58.42 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 61.46 | 58.42 |
| Solyc05g055020.2.1 | Tomato | nucleus | 64.06 | 58.29 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 60.94 | 58.21 |
| CDY32697 | Canola | nucleus | 53.65 | 58.19 |
| PGSC0003DMT400029945 | Potato | nucleus | 55.21 | 57.92 |
| Zm00001d051143_P001 | Maize | nucleus | 60.94 | 57.92 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 61.46 | 57.84 |
| Os10t0478000-01 | Rice | nucleus | 61.46 | 57.84 |
| Zm00001d017263_P001 | Maize | nucleus | 61.46 | 57.84 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 60.42 | 57.71 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 60.42 | 57.71 |
| KXG30661 | Sorghum | nucleus | 62.5 | 57.69 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 51.56 | 57.23 |
| Os02t0623400-00 | Rice | nucleus | 61.98 | 56.94 |
| CDY59510 | Canola | nucleus | 53.65 | 56.91 |
| CDY47983 | Canola | nucleus | 52.08 | 56.82 |
| CDY55387 | Canola | nucleus | 52.6 | 56.74 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 51.04 | 56.65 |
| CDY14848 | Canola | nucleus | 52.08 | 56.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.79 | 55.84 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 59.9 | 55.83 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 59.9 | 55.83 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 50.0 | 55.81 |
| Zm00001d014032_P001 | Maize | nucleus | 60.94 | 55.71 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 47.4 | 55.49 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 50.52 | 55.43 |
| CDY10790 | Canola | nucleus | 61.98 | 55.35 |
| CDY24755 | Canola | nucleus, plastid | 61.98 | 55.35 |
| CDY15426 | Canola | nucleus | 62.5 | 55.3 |
| Zm00001d032696_P001 | Maize | nucleus | 60.94 | 54.93 |
| CDY57087 | Canola | nucleus | 61.98 | 54.84 |
| CDY57088 | Canola | nucleus | 61.98 | 54.84 |
| CDY32977 | Canola | nucleus, plastid | 52.08 | 54.64 |
| CDY61050 | Canola | nucleus | 52.08 | 54.64 |
| CDY06675 | Canola | nucleus, plastid | 55.21 | 53.54 |
| CDY10247 | Canola | nucleus, plastid | 55.21 | 53.54 |
| CDY59064 | Canola | nucleus | 55.21 | 53.54 |
| CDX94980 | Canola | nucleus | 54.69 | 53.03 |
| CDY09940 | Canola | nucleus | 54.69 | 53.03 |
| CDY20312 | Canola | nucleus | 54.69 | 53.03 |
| CDY52287 | Canola | nucleus | 54.69 | 53.03 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.52 | 53.01 |
| KXG38327 | Sorghum | nucleus | 61.46 | 52.91 |
| CDX77619 | Canola | cytosol | 26.56 | 52.04 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 43.23 | 51.55 |
| CDX88480 | Canola | nucleus | 49.48 | 51.35 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 60.42 | 51.1 |
| CDY06030 | Canola | nucleus | 47.4 | 50.28 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 48.96 | 50.27 |
| CDX87432 | Canola | nucleus | 49.48 | 50.0 |
| CDY01557 | Canola | nucleus | 49.48 | 49.74 |
| CDX87760 | Canola | nucleus | 46.35 | 49.44 |
| CDX76510 | Canola | nucleus | 49.48 | 49.22 |
| CDY67351 | Canola | nucleus | 49.48 | 49.22 |
| CDY14588 | Canola | nucleus | 48.44 | 48.95 |
| CDY34056 | Canola | nucleus | 48.96 | 48.7 |
| CDY26881 | Canola | nucleus | 48.44 | 48.69 |
| CDX78877 | Canola | nucleus | 49.48 | 48.47 |
| Zm00001d051966_P001 | Maize | nucleus | 61.46 | 47.97 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 59.9 | 47.72 |
| Zm00001d018433_P001 | Maize | nucleus | 60.94 | 47.37 |
| Os02t0811000-01 | Rice | nucleus | 60.94 | 47.18 |
| EES05986 | Sorghum | nucleus | 61.46 | 47.01 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 61.46 | 46.83 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 61.46 | 46.83 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 61.46 | 46.83 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 60.42 | 45.31 |
Protein Annotations
| EnsemblPlants:CDX86199 | EnsemblPlantsGene:GSBRNA2T00144281001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX86199 | ProteinID:CDX86199.1 | SEG:seg | UniParc:UPI0004EE5E55 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA06g29160D
Coordinates
chrLK031845:-:304648..305226
Molecular Weight (calculated)
21830.0 Da
IEP (calculated)
10.526
GRAVY (calculated)
-0.799
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPHQANK NPITSAQLTP PSPSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFASRAVR LYLREVRDFQ AKARGVSYEK KRKRVNRQRT QTLSQTQPPL PLQQQQPQQG QSVMANYSGA IV
101: LDALIGRLRA AYEENGGPPE ANPFASRAVR LYLREVRDFQ AKARGVSYEK KRKRVNRQRT QTLSQTQPPL PLQQQQPQQG QSVMANYSGA IV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.