Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032696_P001 | Maize | nucleus | 96.67 | 95.31 |
| Os10t0478000-01 | Rice | nucleus | 80.95 | 83.33 |
| GSMUA_Achr11P... | Banana | nucleus | 37.14 | 82.98 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 80.0 | 81.55 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 80.0 | 81.55 |
| Zm00001d025863_P001 | Maize | nucleus | 63.33 | 79.17 |
| Zm00001d003057_P001 | Maize | nucleus | 70.95 | 74.5 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 78.1 | 72.25 |
| Zm00001d051143_P001 | Maize | nucleus | 69.05 | 71.78 |
| Zm00001d017263_P001 | Maize | nucleus | 69.52 | 71.57 |
| Solyc09g025280.1.1 | Tomato | nucleus | 58.1 | 71.34 |
| Bra023738.1-P | Field mustard | plastid | 59.05 | 70.45 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 60.95 | 69.95 |
| KRH34151 | Soybean | plastid | 58.57 | 69.89 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 79.52 | 69.29 |
| CDY69731 | Canola | plastid | 61.43 | 66.15 |
| CDY35523 | Canola | plastid | 61.43 | 66.15 |
| PGSC0003DMT400026698 | Potato | nucleus | 58.1 | 65.95 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 62.86 | 65.67 |
| KRG92413 | Soybean | nucleus | 60.0 | 65.62 |
| AT3G23290.2 | Thale cress | plastid | 60.48 | 65.13 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.33 | 65.12 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 59.05 | 64.92 |
| KRG92633 | Soybean | nucleus | 58.57 | 64.74 |
| KRG95674 | Soybean | nucleus | 62.38 | 64.53 |
| KRG97044 | Soybean | plastid | 56.19 | 64.48 |
| KRH67397 | Soybean | nucleus | 61.9 | 64.04 |
| Bra014935.1-P | Field mustard | plastid | 60.48 | 63.82 |
| CDX77531 | Canola | plastid | 60.48 | 63.82 |
| CDX85083 | Canola | plastid | 60.48 | 63.82 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 52.38 | 63.58 |
| KRH34391 | Soybean | nucleus | 60.48 | 62.87 |
| KRH32192 | Soybean | nucleus | 61.9 | 62.8 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 60.48 | 62.56 |
| KRH68792 | Soybean | plastid | 54.76 | 62.5 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 56.19 | 62.11 |
| CDY52479 | Canola | nucleus, plastid | 56.19 | 62.11 |
| PGSC0003DMT400051692 | Potato | nucleus | 61.43 | 62.02 |
| KRH56293 | Soybean | nucleus | 61.9 | 61.61 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 50.48 | 61.27 |
| CDY05593 | Canola | nucleus, plastid | 55.71 | 61.26 |
| CDY52505 | Canola | nucleus, plastid | 55.71 | 61.26 |
| Solyc09g090180.1.1 | Tomato | plastid | 60.48 | 61.06 |
| CDX86199 | Canola | plastid | 55.71 | 60.94 |
| CDY57024 | Canola | nucleus, plastid | 55.71 | 60.94 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 55.24 | 60.73 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 50.48 | 60.57 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 55.24 | 60.42 |
| Solyc06g083860.2.1 | Tomato | nucleus | 62.38 | 60.09 |
| Bra009997.1-P | Field mustard | plastid | 54.76 | 59.9 |
| CDY64755 | Canola | nucleus, plastid | 54.29 | 59.38 |
| CDY63294 | Canola | nucleus | 51.43 | 58.7 |
| Bra018263.1-P | Field mustard | nucleus | 60.0 | 58.6 |
| CDY24755 | Canola | nucleus, plastid | 60.0 | 58.6 |
| CDY10790 | Canola | nucleus | 60.0 | 58.6 |
| Bra021707.1-P | Field mustard | nucleus | 60.0 | 58.06 |
| CDY57088 | Canola | nucleus | 60.0 | 58.06 |
| CDY57087 | Canola | nucleus | 60.0 | 58.06 |
| CDY15426 | Canola | nucleus | 60.0 | 58.06 |
| AT2G31160.1 | Thale cress | nucleus | 60.48 | 57.99 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.48 | 57.92 |
| CDX74186 | Canola | nucleus, plastid | 52.38 | 57.89 |
| CDY21126 | Canola | nucleus, plastid | 52.38 | 57.89 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 52.38 | 57.89 |
| PGSC0003DMT400029945 | Potato | nucleus | 50.0 | 57.38 |
| CDY30000 | Canola | nucleus, plastid | 51.9 | 57.37 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 49.05 | 57.22 |
| Zm00001d043011_P001 | Maize | nucleus | 56.67 | 56.94 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 53.81 | 56.22 |
| CDY49331 | Canola | nucleus, plastid | 52.38 | 56.12 |
| CDY42932 | Canola | nucleus, plastid | 52.38 | 55.84 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 51.9 | 55.33 |
| Zm00001d051966_P001 | Maize | nucleus | 64.76 | 55.28 |
| Zm00001d012473_P001 | Maize | nucleus | 54.29 | 54.81 |
| Zm00001d018433_P001 | Maize | nucleus | 64.29 | 54.66 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 52.86 | 53.11 |
| Zm00001d015342_P001 | Maize | nucleus | 61.9 | 52.63 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.86 | 52.61 |
| Zm00001d046998_P001 | Maize | nucleus | 62.86 | 47.65 |
| Zm00001d010596_P001 | Maize | nucleus | 55.71 | 47.37 |
| Zm00001d038442_P001 | Maize | nucleus | 55.71 | 47.37 |
| Zm00001d036617_P001 | Maize | nucleus | 60.48 | 45.85 |
| Zm00001d018775_P001 | Maize | nucleus | 49.05 | 40.23 |
| Zm00001d038016_P001 | Maize | extracellular | 55.71 | 38.87 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 52.38 | 37.04 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 55.71 | 37.03 |
| Zm00001d036993_P001 | Maize | mitochondrion | 20.48 | 24.86 |
| Zm00001d020559_P001 | Maize | mitochondrion | 9.52 | 9.76 |
Protein Annotations
| EMBL:BT033977 | EMBL:BT037907 | EMBL:EU953146 | EnsemblPlants:Zm00001d014032_P001 | EnsemblPlants:Zm00001d014032_T001 | EnsemblPlantsGene:Zm00001d014032 |
| EntrezGene:100217086 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF15 | PFAM:PF04852 |
| PFscan:PS51697 | ProteinID:AQK65072.1 | SEG:seg | UniParc:UPI00017B6166 | UniProt:B4FA39 | MapMan:35.1 |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Coordinates
chr5:+:29707848..29708480
Molecular Weight (calculated)
22485.3 Da
IEP (calculated)
10.132
GRAVY (calculated)
-0.727
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVPHPDSP HSDNSGGGGG SASGALSPGA SSAGAASALA SPSRYESQKR RDWNTFGQYL RNHRPPLSLA RCSGAHVLEF LRYLDQFGKT KVHTPACPFF
101: GHPAPPAPCP CPLRQAWGSL DALVGRLRAA YEENGGRPEN NPFGARAVRL YLREVRDHQS RARGVSYEKK KRKKAPAHPV PAAVISSSHD GNGHHYEHQM
201: PPPPPPGAAA
101: GHPAPPAPCP CPLRQAWGSL DALVGRLRAA YEENGGRPEN NPFGARAVRL YLREVRDHQS RARGVSYEKK KRKKAPAHPV PAAVISSSHD GNGHHYEHQM
201: PPPPPPGAAA
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.