Factsheet for Zm00001d043011_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87784	Sorghum	nucleus	93.78	91.16
Os01t0828900-00	Rice	nucleus, plastid	85.65	84.43
Zm00001d012473_P001	Maize	nucleus	78.95	79.33
TraesCS3A01G348900.1	Wheat	golgi	73.68	72.64
TraesCS3D01G342800.1	Wheat	cytosol, nucleus, plastid	73.21	72.17
TraesCS3B01G381000.1	Wheat	cytosol, nucleus, plastid	73.21	72.17
Zm00001d025863_P001	Maize	nucleus	52.15	64.88
Zm00001d038442_P001	Maize	nucleus	76.56	64.78
Zm00001d010596_P001	Maize	nucleus	76.08	64.37
HORVU3Hr1G088000.2	Barley	plastid	70.33	64.19
GSMUA_Achr11P...	Banana	nucleus	51.67	61.36
GSMUA_AchrUn_...	Banana	nucleus	54.55	61.29
Zm00001d003057_P001	Maize	nucleus	55.5	58.0
Zm00001d051143_P001	Maize	nucleus	55.5	57.43
Zm00001d017263_P001	Maize	nucleus	55.5	56.86
Zm00001d014032_P001	Maize	nucleus	56.94	56.67
Zm00001d032696_P001	Maize	nucleus	56.94	55.87
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	52.63	53.14
Zm00001d051966_P001	Maize	nucleus	59.33	50.41
Zm00001d018433_P001	Maize	nucleus	58.85	49.8
GSMUA_Achr11P...	Banana	nucleus	46.41	47.78
Zm00001d015342_P001	Maize	nucleus	55.5	46.96
Zm00001d038016_P001	Maize	extracellular	66.51	46.18
Zm00001d046998_P001	Maize	nucleus	58.37	44.04
Zm00001d036617_P001	Maize	nucleus	57.89	43.68
Zm00001d010507_P001	Maize	nucleus, plastid	65.07	43.04
Zm00001d018775_P001	Maize	nucleus	49.28	40.23
Zm00001d036993_P001	Maize	mitochondrion	25.36	30.64
Zm00001d020559_P001	Maize	mitochondrion	10.53	10.73

Protein Annotations

EnsemblPlants:Zm00001d043011_P001	EnsemblPlants:Zm00001d043011_T001	EnsemblPlantsGene:Zm00001d043011	EntrezGene:103651051	InterPro:ALOG_dom	InterPro:IPR006936
PANTHER:PTHR31165	PANTHER:PTHR31165:SF18	PFAM:PF04852	PFscan:PS51697	ProteinID:ONM36705.1	SEG:seg
UniParc:UPI0002212724	UniProt:A0A1D6N7Z3	MapMan:35.1	:	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5

Coordinates

chr3:+:186401233..186401862

Molecular Weight (calculated)

21713.4 Da

IEP (calculated)

10.437

GRAVY (calculated)

-0.542

Length

209 amino acids

Sequence
(BLAST)

001: MDPSGPGPSS VVGAGGGEAP AVAPQRPAQL SRYESQKRRD WNTFLQYLRN HRPPLTLARC SGAHVIEFLR YLDQFGKTKV HAAGCAYYGQ PAPPGPCPCP
101: LRQAWGSLDA LIGRLRAAYE ESGGTPESNP FAARAVRIYL REVRDSQAKA RGIPYEKKKR KRTQQAAAEA STSSSAAAAA GGSGSGSGRA AAASSAAQAG
201: GSSAAPSTT

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.