Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018433_P001 | Maize | nucleus | 93.09 | 92.71 |
| EES05986 | Sorghum | nucleus | 93.9 | 92.03 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 88.21 | 86.11 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 88.21 | 86.11 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 88.21 | 86.11 |
| Os02t0811000-01 | Rice | nucleus | 85.37 | 84.68 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 87.4 | 83.98 |
| GSMUA_Achr11P... | Banana | nucleus | 30.89 | 80.85 |
| Bra023738.1-P | Field mustard | plastid | 53.66 | 75.0 |
| Zm00001d025863_P001 | Maize | nucleus | 50.41 | 73.81 |
| Solyc09g025280.1.1 | Tomato | nucleus | 51.22 | 73.68 |
| CDY69731 | Canola | plastid | 56.1 | 70.77 |
| CDY35523 | Canola | plastid | 56.1 | 70.77 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 52.44 | 70.49 |
| AT3G23290.2 | Thale cress | plastid | 55.69 | 70.26 |
| CDX77531 | Canola | plastid | 56.1 | 69.35 |
| Bra014935.1-P | Field mustard | plastid | 56.1 | 69.35 |
| PGSC0003DMT400026698 | Potato | nucleus | 52.03 | 69.19 |
| CDX85083 | Canola | plastid | 55.69 | 68.84 |
| KRH34151 | Soybean | plastid | 49.19 | 68.75 |
| KRG92413 | Soybean | nucleus | 53.66 | 68.75 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 55.69 | 68.16 |
| Zm00001d003057_P001 | Maize | nucleus | 55.28 | 68.0 |
| KRH67397 | Soybean | nucleus | 55.69 | 67.49 |
| Zm00001d017263_P001 | Maize | nucleus | 55.69 | 67.16 |
| KRG95674 | Soybean | nucleus | 55.28 | 67.0 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 54.06 | 65.52 |
| KRH32192 | Soybean | nucleus | 54.88 | 65.22 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 45.53 | 65.12 |
| KRH34391 | Soybean | nucleus | 53.25 | 64.85 |
| Zm00001d051143_P001 | Maize | nucleus | 53.25 | 64.85 |
| Zm00001d014032_P001 | Maize | nucleus | 55.28 | 64.76 |
| KRG92633 | Soybean | nucleus | 50.0 | 64.74 |
| Solyc09g090180.1.1 | Tomato | plastid | 54.47 | 64.42 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.12 | 64.16 |
| KRG97044 | Soybean | plastid | 47.56 | 63.93 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 44.72 | 63.58 |
| KRH56293 | Soybean | nucleus | 54.47 | 63.51 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 49.19 | 63.35 |
| Zm00001d032696_P001 | Maize | nucleus | 54.47 | 62.91 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 48.37 | 62.63 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 44.31 | 62.29 |
| CDY52479 | Canola | nucleus, plastid | 47.97 | 62.11 |
| CDY57024 | Canola | nucleus, plastid | 48.37 | 61.98 |
| KRH68792 | Soybean | plastid | 46.34 | 61.96 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 45.94 | 61.75 |
| PGSC0003DMT400051692 | Potato | nucleus | 52.03 | 61.54 |
| CDX86199 | Canola | plastid | 47.97 | 61.46 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 47.97 | 61.46 |
| CDY52505 | Canola | nucleus, plastid | 47.56 | 61.26 |
| CDY05593 | Canola | nucleus, plastid | 47.56 | 61.26 |
| Solyc06g083860.2.1 | Tomato | nucleus | 54.06 | 61.01 |
| CDY64755 | Canola | nucleus, plastid | 47.56 | 60.94 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 47.15 | 60.73 |
| Bra009997.1-P | Field mustard | plastid | 47.15 | 60.42 |
| Bra021707.1-P | Field mustard | nucleus | 53.25 | 60.37 |
| CDY57088 | Canola | nucleus | 53.25 | 60.37 |
| CDY57087 | Canola | nucleus | 53.25 | 60.37 |
| CDY15426 | Canola | nucleus | 53.25 | 60.37 |
| AT2G31160.1 | Thale cress | nucleus | 53.25 | 59.82 |
| Bra018263.1-P | Field mustard | nucleus | 52.03 | 59.53 |
| CDY10790 | Canola | nucleus | 52.03 | 59.53 |
| Zm00001d043011_P001 | Maize | nucleus | 50.41 | 59.33 |
| CDY24755 | Canola | nucleus, plastid | 51.63 | 59.07 |
| PGSC0003DMT400029945 | Potato | nucleus | 43.9 | 59.02 |
| CDY30000 | Canola | nucleus, plastid | 45.53 | 58.95 |
| CDY21126 | Canola | nucleus, plastid | 45.53 | 58.95 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 42.68 | 58.33 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 44.72 | 57.89 |
| CDX74186 | Canola | nucleus, plastid | 44.72 | 57.89 |
| CDY63294 | Canola | nucleus | 43.09 | 57.61 |
| CDY49331 | Canola | nucleus, plastid | 45.53 | 57.14 |
| CDY42932 | Canola | nucleus, plastid | 45.53 | 56.85 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 46.34 | 56.72 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 45.12 | 56.35 |
| Zm00001d012473_P001 | Maize | nucleus | 46.75 | 55.29 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 46.34 | 54.55 |
| Solyc05g055020.2.1 | Tomato | nucleus | 46.34 | 54.03 |
| Zm00001d015342_P001 | Maize | nucleus | 51.22 | 51.01 |
| Zm00001d038442_P001 | Maize | nucleus | 49.59 | 49.39 |
| Zm00001d010596_P001 | Maize | nucleus | 48.37 | 48.18 |
| Zm00001d046998_P001 | Maize | nucleus | 52.44 | 46.57 |
| Zm00001d036617_P001 | Maize | nucleus | 50.41 | 44.77 |
| Zm00001d018775_P001 | Maize | nucleus | 42.68 | 41.02 |
| Zm00001d038016_P001 | Maize | extracellular | 49.19 | 40.2 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 50.0 | 38.92 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 45.53 | 37.71 |
| Zm00001d036993_P001 | Maize | mitochondrion | 17.07 | 24.28 |
| Zm00001d020559_P001 | Maize | mitochondrion | 8.94 | 10.73 |
Protein Annotations
| EMBL:BT062108 | EnsemblPlants:Zm00001d051966_P001 | EnsemblPlants:Zm00001d051966_T001 | EnsemblPlantsGene:Zm00001d051966 | EntrezGene:100381724 | InterPro:ALOG_dom |
| InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF7 | PFAM:PF04852 | PFscan:PS51697 | ProteinID:AQK55652.1 |
| SEG:seg | UniParc:UPI0001948AB5 | UniProt:C0HIF2 | MapMan:35.1 | : | : |
Description
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Coordinates
chr4:-:175533999..175534739
Molecular Weight (calculated)
25689.1 Da
IEP (calculated)
10.109
GRAVY (calculated)
-0.572
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHHHHHHH MIPGQEPPAA DSSAPDSFFL GPAGAIIFSG GAGVSGAGSS SGAAALGSSA GAGGGPSPSS SSPSLSRYES QKRRDWNTFG QYLRNHRPPL
101: SLSRCSGAHV LEFLKYMDQF GKTKVHTPVC PFYGHPNPPA PCPCPLRQAW GSLDALIGRL RAAYEENGGT PEMNPFGARA VRLYLREVRE SQARARGISY
201: EKKKRKKPSA ASAAAPGPSS EGSPPPGPSG GGGGFGTSAS PRFIMP
101: SLSRCSGAHV LEFLKYMDQF GKTKVHTPVC PFYGHPNPPA PCPCPLRQAW GSLDALIGRL RAAYEENGGT PEMNPFGARA VRLYLREVRE SQARARGISY
201: EKKKRKKPSA ASAAAPGPSS EGSPPPGPSG GGGGFGTSAS PRFIMP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.