Factsheet for Bra014935.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77531	Canola	plastid	100.0	100.0
CDX85083	Canola	plastid	99.5	99.5
Bra023738.1-P	Field mustard	plastid	81.41	92.05
GSMUA_Achr11P...	Banana	nucleus	37.19	78.72
Zm00001d025863_P001	Maize	nucleus	59.3	70.24
PGSC0003DMT400044213	Potato	mitochondrion	71.36	69.95
Solyc09g090180.1.1	Tomato	plastid	70.85	67.79
Bra018337.1-P	Field mustard	cytosol	53.77	64.85
Bra018263.1-P	Field mustard	nucleus	69.85	64.65
TraesCS6B01G256500.1	Wheat	nucleus	64.32	64.0
EES11114	Sorghum	nucleus	63.82	63.82
HORVU2Hr1G089190.1	Barley	nucleus	63.82	63.82
TraesCS2D01G378900.1	Wheat	nucleus	64.32	63.68
Bra021707.1-P	Field mustard	nucleus	69.35	63.59
Bra036134.1-P	Field mustard	nucleus, plastid	61.31	63.54
Zm00001d003057_P001	Maize	nucleus	63.82	63.5
TraesCS6A01G225000.1	Wheat	nucleus	64.32	63.37
TraesCS6D01G209700.1	Wheat	nucleus	64.32	63.37
TraesCS2A01G382500.1	Wheat	nucleus	63.82	63.18
TraesCS2B01G399800.1	Wheat	nucleus	63.82	63.18
Os04t0516200-01	Rice	nucleus	63.82	62.87
Bra020610.1-P	Field mustard	nucleus, plastid	60.3	62.83
GSMUA_Achr5P18640_001	Banana	nucleus	54.27	62.79
HORVU6Hr1G058340.2	Barley	nucleus	64.32	62.75
Zm00001d017263_P001	Maize	nucleus	64.32	62.75
Bra020365.1-P	Field mustard	nucleus	56.78	62.43
Os10t0478000-01	Rice	nucleus	63.82	62.25
Bra001109.1-P	Field mustard	nucleus, plastid	59.3	62.11
Bra009997.1-P	Field mustard	plastid	59.8	61.98
Bra004711.1-P	Field mustard	nucleus	51.76	61.68
GSMUA_Achr1P09270_001	Banana	nucleus	53.27	61.63
KXG30661	Sorghum	nucleus	64.32	61.54
GSMUA_Achr5P03870_001	Banana	nucleus	53.27	61.27
GSMUA_Achr5P14570_001	Banana	nucleus	52.76	60.69
TraesCS1B01G172100.1	Wheat	nucleus	62.81	60.68
TraesCS1D01G153700.1	Wheat	nucleus	62.81	60.68
Zm00001d014032_P001	Maize	nucleus	63.82	60.48
Zm00001d051143_P001	Maize	nucleus	61.31	60.4
Bra040188.1-P	Field mustard	nucleus, plastid	59.3	59.9
Os02t0623400-00	Rice	nucleus	62.81	59.81
Bra016865.1-P	Field mustard	nucleus	52.76	59.66
Zm00001d032696_P001	Maize	nucleus	63.82	59.62
Bra002642.1-P	Field mustard	nucleus, plastid	54.27	59.02
GSMUA_Achr4P21940_001	Banana	nucleus	51.76	58.86
Bra000269.1-P	Field mustard	nucleus	52.26	58.76
GSMUA_Achr1P05650_001	Banana	nucleus	48.24	58.54
GSMUA_AchrUn_...	Banana	nucleus	45.23	58.44
GSMUA_Achr4P28760_001	Banana	nucleus	52.76	57.38
KXG38327	Sorghum	nucleus	63.82	56.95
Zm00001d051966_P001	Maize	nucleus	69.35	56.1
HORVU1Hr1G041240.5	Barley	nucleus	63.82	55.95
Zm00001d018433_P001	Maize	nucleus	69.35	55.87
Bra015551.1-P	Field mustard	nucleus, plastid	55.28	55.56
Os02t0811000-01	Rice	nucleus	68.84	55.24
Bra031552.1-P	Field mustard	nucleus	54.77	55.05
EES05986	Sorghum	nucleus	69.35	54.98
GSMUA_Achr6P36540_001	Banana	nucleus	44.22	54.66
Bra021995.1-P	Field mustard	nucleus	49.25	54.14
TraesCS6B01G414700.1	Wheat	nucleus	67.34	53.17
TraesCS6D01G361900.1	Wheat	nucleus	67.34	53.17
TraesCS6A01G377300.1	Wheat	nucleus	67.34	53.17
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	49.25	52.41
TraesCS1A01G154900.1	Wheat	nucleus	62.81	51.87
Bra021000.1-P	Field mustard	nucleus, plastid	50.25	51.81
Bra035066.1-P	Field mustard	nucleus	49.25	51.58
HORVU6Hr1G088790.1	Barley	nucleus	66.33	51.56
Bra013330.1-P	Field mustard	nucleus	49.75	50.51
Bra008382.1-P	Field mustard	nucleus	47.24	49.21
Bra003637.1-P	Field mustard	nucleus	34.67	43.12
Bra040137.1-P	Field mustard	nucleus, plastid	58.29	39.06

Protein Annotations

EnsemblPlants:Bra014935.1	EnsemblPlants:Bra014935.1-P	EnsemblPlantsGene:Bra014935	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF38	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002540E75	UniProt:M4DEL3
MapMan:35.1	:	:	:	:	:

Description

AT3G23290 (E=7e-082) LSH4 | LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4)

Coordinates

chrA07:-:5095519..5096735

Molecular Weight (calculated)

21986.0 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.698

Length

199 amino acids

Sequence
(BLAST)

001: MDPIHGFMST SNISHNTNLM IAAAAATTTT TSSSSSSSGG SATNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHMQI
101: CPFFGHPNPP APCTCPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP QAPLPPPHQP GISNSPNLQ

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.