Factsheet for GSMUA_Achr6P36540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05650_001	Banana	nucleus	68.32	67.07
GSMUA_AchrUn_...	Banana	nucleus	50.93	53.25
GSMUA_Achr1P09270_001	Banana	nucleus	55.28	51.74
VIT_07s0005g03530.t01	Wine grape	nucleus	57.76	50.82
GSMUA_Achr5P18640_001	Banana	nucleus	53.42	50.0
Bra023738.1-P	Field mustard	plastid	53.42	48.86
GSMUA_Achr5P14570_001	Banana	nucleus	52.17	48.55
Solyc09g025280.1.1	Tomato	nucleus	51.55	48.54
KRH67397	Soybean	nucleus	60.87	48.28
KRG95674	Soybean	nucleus	60.87	48.28
GSMUA_Achr5P03870_001	Banana	nucleus	51.55	47.98
CDY69731	Canola	plastid	56.52	46.67
CDY35523	Canola	plastid	56.52	46.67
PGSC0003DMT400026698	Potato	nucleus	52.8	45.95
GSMUA_Achr4P21940_001	Banana	nucleus	49.69	45.71
AT3G23290.2	Thale cress	plastid	55.28	45.64
GSMUA_Achr4P28760_001	Banana	nucleus	51.55	45.36
KRG92413	Soybean	nucleus	54.04	45.31
KRH32192	Soybean	nucleus	57.76	44.93
KRH34151	Soybean	plastid	49.07	44.89
PGSC0003DMT400044213	Potato	mitochondrion	56.52	44.83
VIT_05s0049g01170.t01	Wine grape	nucleus	55.9	44.78
CDX85083	Canola	plastid	54.66	44.22
CDX77531	Canola	plastid	54.66	44.22
Bra014935.1-P	Field mustard	plastid	54.66	44.22
AT5G28490.1	Thale cress	nucleus, plastid	52.17	44.21
CDY52479	Canola	nucleus, plastid	52.17	44.21
CDY57024	Canola	nucleus, plastid	52.17	43.75
KRH56293	Soybean	nucleus	57.14	43.6
KRH34391	Soybean	nucleus	54.66	43.56
Solyc09g090180.1.1	Tomato	plastid	55.9	43.27
CDX86199	Canola	plastid	51.55	43.23
Bra036134.1-P	Field mustard	nucleus, plastid	51.55	43.23
KRG92633	Soybean	nucleus	50.93	43.16
CDY64755	Canola	nucleus, plastid	50.93	42.71
VIT_14s0036g00540.t01	Wine grape	plastid	50.31	42.41
CDY05593	Canola	nucleus, plastid	50.31	42.41
CDY52505	Canola	nucleus, plastid	50.31	42.41
Bra009997.1-P	Field mustard	plastid	50.31	42.19
Bra020610.1-P	Field mustard	nucleus, plastid	49.69	41.88
GSMUA_Achr11P...	Banana	nucleus	24.22	41.49
PGSC0003DMT400051692	Potato	nucleus	53.42	41.35
Solyc06g083860.2.1	Tomato	nucleus	55.28	40.83
KRG97044	Soybean	plastid	45.96	40.44
Bra021707.1-P	Field mustard	nucleus	53.42	39.63
Bra040188.1-P	Field mustard	nucleus, plastid	48.45	39.59
CDY21126	Canola	nucleus, plastid	46.58	39.47
AT3G04510.1	Thale cress	nucleus, plastid	49.07	39.3
CDY49331	Canola	nucleus, plastid	47.83	39.29
CDY57087	Canola	nucleus	52.8	39.17
CDY57088	Canola	nucleus	52.8	39.17
CDY15426	Canola	nucleus	52.8	39.17
KRH68792	Soybean	plastid	44.72	39.13
CDY42932	Canola	nucleus, plastid	47.83	39.09
CDX74186	Canola	nucleus, plastid	45.96	38.95
Bra001109.1-P	Field mustard	nucleus, plastid	45.96	38.95
GSMUA_Achr4P31900_001	Banana	nucleus	45.34	38.83
PGSC0003DMT400029945	Potato	nucleus	44.1	38.8
GSMUA_Achr11P...	Banana	nucleus	42.24	38.64
Bra018263.1-P	Field mustard	nucleus	51.55	38.6
CDY10790	Canola	nucleus	51.55	38.6
CDY24755	Canola	nucleus, plastid	51.55	38.6
CDY63294	Canola	nucleus	44.1	38.59
CDY30000	Canola	nucleus, plastid	45.34	38.42
AT2G31160.1	Thale cress	nucleus	52.17	38.36
Solyc04g009980.2.1	Tomato	nucleus, plastid	42.86	38.33
GSMUA_AchrUn_...	Banana	nucleus	44.1	38.17
GSMUA_Achr9P30540_001	Banana	nucleus	43.48	37.84
GSMUA_Achr8P01890_001	Banana	nucleus	47.2	37.44
GSMUA_Achr5P00260_001	Banana	nucleus	47.2	37.25
GSMUA_Achr11P...	Banana	nucleus	45.96	37.19
GSMUA_Achr10P...	Banana	nucleus	46.58	36.76
GSMUA_AchrUn_...	Banana	nucleus	47.2	36.54
GSMUA_Achr6P08720_001	Banana	nucleus	44.1	36.04
GSMUA_Achr3P10070_001	Banana	nucleus	47.2	35.02
GSMUA_Achr5P07420_001	Banana	nucleus	45.96	34.91
PGSC0003DMT400060169	Potato	nucleus, plastid	44.72	34.45
GSMUA_Achr11P...	Banana	nucleus	47.2	34.23
Solyc05g055020.2.1	Tomato	nucleus	44.72	34.12
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	42.24	32.85
GSMUA_Achr11P...	Banana	nucleus	40.99	32.51
GSMUA_Achr7P18300_001	Banana	nucleus	40.99	32.04
GSMUA_Achr5P29450_001	Banana	cytosol, nucleus, plastid	42.86	25.75
Bra040137.1-P	Field mustard	nucleus, plastid	46.58	25.25
GSMUA_Achr9P18050_001	Banana	nucleus	42.24	23.94

Protein Annotations

EnsemblPlants:GSMUA_Achr6P36540_001	EnsemblPlants:GSMUA_Achr6T36540_001	EnsemblPlantsGene:GSMUA_Achr6G36540_001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF5	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000294D2D4	UniProt:M0TD96
MapMan:35.1	:	:	:	:	:

Description

G1-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G36540_001]

Coordinates

chr6:-:34477238..34477810

Molecular Weight (calculated)

17703.8 Da

IEP (calculated)

10.816

GRAVY (calculated)

-0.853

Length

161 amino acids

Sequence
(BLAST)

001: MDIIPSPASP SSDGFTVSPN SAAPSSSSPT PSPSRYEAQK RRDWNTFSQY LKNHQPPLSL SRCSAAHVLE FLRYLDQFGK TKIHTPACPF FGHPNPPAPC
101: PSNPFGARAV RLYLREIREL QAKARGISYR KHRKKPQKTT SPTPSHPHNP HSPPPGTSSA A

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.