Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P00260_001 | Banana | nucleus | 78.38 | 85.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 73.87 | 78.85 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 63.51 | 76.22 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 56.31 | 66.49 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 46.85 | 60.47 |
| Os02t0166800-01 | Rice | nucleus | 50.45 | 58.64 |
| GSMUA_Achr11P... | Banana | nucleus | 46.4 | 58.52 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.5 | 58.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.09 | 57.79 |
| GSMUA_Achr11P... | Banana | nucleus | 24.32 | 57.45 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 44.59 | 57.23 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 41.44 | 56.1 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 44.14 | 56.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.85 | 55.91 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 43.24 | 55.81 |
| PGSC0003DMT400054474 | Potato | plastid | 42.34 | 53.71 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 43.69 | 53.01 |
| Solyc02g069510.1.1 | Tomato | nucleus | 42.34 | 51.93 |
| GSMUA_Achr11P... | Banana | nucleus | 46.4 | 51.76 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 47.75 | 51.21 |
| GSMUA_Achr11P... | Banana | nucleus | 44.14 | 48.28 |
| Zm00001d015342_P001 | Maize | nucleus | 53.15 | 47.77 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 34.23 | 47.2 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 42.79 | 46.8 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 41.44 | 46.7 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 55.41 | 45.9 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 55.41 | 45.9 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 55.41 | 45.9 |
| EES04579 | Sorghum | nucleus | 53.15 | 45.74 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 55.41 | 45.72 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 44.59 | 45.62 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 53.15 | 45.56 |
| TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 53.15 | 45.38 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 52.7 | 45.17 |
| GSMUA_Achr10P... | Banana | nucleus | 41.44 | 45.1 |
| KRH58368 | Soybean | nucleus | 47.75 | 44.92 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 42.79 | 44.81 |
| Os06t0672400-01 | Rice | nucleus | 54.95 | 44.04 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 40.54 | 43.69 |
| KRH42251 | Soybean | plastid | 47.3 | 42.51 |
| Zm00001d046998_P001 | Maize | nucleus | 51.8 | 41.52 |
| Zm00001d036617_P001 | Maize | nucleus | 51.35 | 41.16 |
| OQU76862 | Sorghum | nucleus | 51.8 | 40.78 |
| KXG34092 | Sorghum | nucleus | 51.8 | 40.78 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 46.85 | 40.0 |
| Zm00001d018775_P001 | Maize | nucleus | 45.95 | 39.84 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 45.95 | 39.23 |
| TraesCS2B01G267400.1 | Wheat | nucleus | 45.05 | 38.91 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 45.5 | 38.85 |
| Os07t0139300-01 | Rice | nucleus | 46.85 | 37.68 |
| EER97956 | Sorghum | mitochondrion, nucleus | 46.4 | 36.27 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 42.34 | 35.07 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 40.54 | 31.69 |
| Os08t0248000-00 | Rice | nucleus | 28.83 | 31.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P18460_001 | EnsemblPlants:GSMUA_Achr11T18460_001 | EnsemblPlantsGene:GSMUA_Achr11G18460_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF5 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000294F6D6 | UniProt:M0RTC6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative uncharacterized protein Sb04g004470 [Source:GMGC_GENE;Acc:GSMUA_Achr11G18460_001]
Coordinates
chr11:-:19838590..19839819
Molecular Weight (calculated)
24323.0 Da
IEP (calculated)
10.663
GRAVY (calculated)
-0.727
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMEFNHGSM SSINSDSSGN SGAPKGGGGG GRPSRYESQK RRDWNTFRQY LRNHRPPLEL SRCSGAHVLE FLRYLDQFGK TKQAWGSLDA LVGRLRAAFE
101: ENGGQPETNP FAARAVRLYL REVRDSQAKA RGIAYEKKKK RKRPPLQPPQ GHSPQSPLPM VPAAAPAMAY GRRAADLNLV DGGYTHHLHE HLMMPAMDSG
201: RQLTAAAAEA HPGGIMPLSV LN
101: ENGGQPETNP FAARAVRLYL REVRDSQAKA RGIAYEKKKK RKRPPLQPPQ GHSPQSPLPM VPAAAPAMAY GRRAADLNLV DGGYTHHLHE HLMMPAMDSG
201: RQLTAAAAEA HPGGIMPLSV LN
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.