Factsheet for Os07t0139300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

nucleus: 20227044

gfp PMID: 20227044 doi

L Hong, Q Qian, K Zhu, D Tang, Z Huang, L Gao, M Li, M Gu, Z Cheng

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018775_P001	Maize	nucleus	58.7	63.28
HORVU2Hr1G060890.2	Barley	nucleus, plastid	56.52	60.0
TraesCS2A01G254700.1	Wheat	nucleus	54.71	58.08
TraesCS2B01G267400.1	Wheat	nucleus	53.99	57.98
EER97956	Sorghum	mitochondrion, nucleus	59.42	57.75
TraesCS2D01G255200.1	Wheat	nucleus	53.26	56.54
Os02t0166800-01	Rice	nucleus	38.04	54.97
Os04t0516200-01	Rice	nucleus	38.77	52.97
GSMUA_Achr9P30540_001	Banana	nucleus	34.78	51.89
Os10t0478000-01	Rice	nucleus	38.04	51.47
Os02t0623400-00	Rice	nucleus	38.77	51.2
PGSC0003DMT400054474	Potato	plastid	32.25	50.86
GSMUA_Achr5P00260_001	Banana	nucleus	36.96	50.0
Solyc02g069510.1.1	Tomato	nucleus	32.61	49.72
GSMUA_Achr4P31900_001	Banana	nucleus	33.7	49.47
Os01t0828900-00	Rice	nucleus, plastid	37.68	49.06
GSMUA_AchrUn_...	Banana	nucleus	36.96	49.04
GSMUA_Achr11P...	Banana	nucleus	37.68	46.85
Os02t0811000-01	Rice	nucleus	39.86	44.35
KRH58368	Soybean	nucleus	36.96	43.22
Os05t0472000-00	Rice	nucleus	36.96	42.86
Os06t0672400-01	Rice	nucleus	42.75	42.6
KRH42251	Soybean	plastid	37.32	41.7
Os05t0347400-01	Rice	nucleus	39.49	38.38
Os08t0248000-00	Rice	nucleus	20.65	28.22

Protein Annotations

EntrezGene:107276238	MapMan:35.1	EMBL:AB512480	ProteinID:ACT67591.1	InterPro:ALOG_dom	ProteinID:BAC45053.1
ProteinID:BAC83499.1	ProteinID:BAS99995.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009909	GO:GO:0009987	GO:GO:0048449	GO:GO:0090698	InterPro:IPR006936	EnsemblPlantsGene:Os07g0139300
EnsemblPlants:Os07t0139300-01	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF5	UniProt:Q8GVZ6
UniParc:UPI00000AE02B	RefSeq:XP_015646356.1	SEG:seg	:	:	:

Description

LONG STERILE LEMMAS 1ALOG domain-containing nuclear protein, Transcriptional regulation, Specification of sterile lemma identity (Os07t0139300-01)

Coordinates

chr7:-:2067244..2068234

Molecular Weight (calculated)

28498.4 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.349

Length

276 amino acids

Sequence
(BLAST)

001: MSSSSAAALG SDDGCSPAEL RPSRYESQKR RDWQTFTQYL AAHRPPLELR RCSGAHVLEF LRYLDRFGKT RVHEPPCPSY GGRSPSAAGP VAAAAAACQC
101: PLRQAWGSLD ALVGRLRAAY DERHGRAGEP DAVAGAGAVA TDSTSSSSAA AANPFAARAV RLYLRDVRDA QAMARGISYH KKKKRRGGNM NGARGGGGGG
201: ARAGVNDGDA TAPPVAVTPG LPLPPLPPCL NGVPFEYCDF GSVLGGAHGA HGGHGGGGGG FYGAGVYLPF LYNTFS

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.