Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018433_P001 | Maize | nucleus | 88.31 | 88.66 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 88.71 | 87.3 |
| EES05986 | Sorghum | nucleus | 88.31 | 87.25 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 88.31 | 86.9 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 88.31 | 86.9 |
| Zm00001d051966_P001 | Maize | nucleus | 84.68 | 85.37 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 87.5 | 84.77 |
| GSMUA_Achr11P... | Banana | nucleus | 30.65 | 80.85 |
| Bra023738.1-P | Field mustard | plastid | 53.63 | 75.57 |
| Solyc09g025280.1.1 | Tomato | nucleus | 49.19 | 71.34 |
| CDY69731 | Canola | plastid | 56.05 | 71.28 |
| CDY35523 | Canola | plastid | 56.05 | 71.28 |
| AT3G23290.2 | Thale cress | plastid | 55.65 | 70.77 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 51.61 | 69.95 |
| CDX77531 | Canola | plastid | 55.24 | 68.84 |
| CDX85083 | Canola | plastid | 55.24 | 68.84 |
| Bra014935.1-P | Field mustard | plastid | 55.24 | 68.84 |
| PGSC0003DMT400026698 | Potato | nucleus | 51.21 | 68.65 |
| KRH34151 | Soybean | plastid | 48.39 | 68.18 |
| KRG92413 | Soybean | nucleus | 52.42 | 67.71 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 54.44 | 67.16 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 46.37 | 66.86 |
| KRG95674 | Soybean | nucleus | 53.63 | 65.52 |
| KRH67397 | Soybean | nucleus | 53.63 | 65.52 |
| Os04t0516200-01 | Rice | nucleus | 53.23 | 65.35 |
| Os10t0478000-01 | Rice | nucleus | 53.63 | 65.2 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.16 | 64.74 |
| KRG92633 | Soybean | nucleus | 49.19 | 64.21 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 52.42 | 64.04 |
| KRH34391 | Soybean | nucleus | 52.02 | 63.86 |
| KRH32192 | Soybean | nucleus | 53.23 | 63.77 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 44.35 | 63.58 |
| Solyc09g090180.1.1 | Tomato | plastid | 52.82 | 62.98 |
| KRH56293 | Soybean | nucleus | 53.23 | 62.56 |
| KRG97044 | Soybean | plastid | 45.97 | 62.3 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 47.58 | 62.11 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 47.58 | 61.78 |
| Os02t0623400-00 | Rice | nucleus | 52.02 | 61.72 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 43.55 | 61.71 |
| CDY52479 | Canola | nucleus, plastid | 47.18 | 61.58 |
| Os02t0166800-01 | Rice | nucleus | 47.18 | 61.26 |
| CDX86199 | Canola | plastid | 47.18 | 60.94 |
| CDY57024 | Canola | nucleus, plastid | 47.18 | 60.94 |
| PGSC0003DMT400051692 | Potato | nucleus | 50.81 | 60.58 |
| CDY10790 | Canola | nucleus | 52.42 | 60.47 |
| Bra018263.1-P | Field mustard | nucleus | 52.42 | 60.47 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 46.77 | 60.42 |
| KRH68792 | Soybean | plastid | 44.76 | 60.33 |
| CDY05593 | Canola | nucleus, plastid | 46.37 | 60.21 |
| CDY52505 | Canola | nucleus, plastid | 46.37 | 60.21 |
| CDY24755 | Canola | nucleus, plastid | 52.02 | 60.0 |
| Bra021707.1-P | Field mustard | nucleus | 52.42 | 59.91 |
| CDY57087 | Canola | nucleus | 52.42 | 59.91 |
| CDY57088 | Canola | nucleus | 52.42 | 59.91 |
| CDY15426 | Canola | nucleus | 52.42 | 59.91 |
| CDY64755 | Canola | nucleus, plastid | 46.37 | 59.9 |
| Bra009997.1-P | Field mustard | plastid | 46.37 | 59.9 |
| AT2G31160.1 | Thale cress | nucleus | 52.82 | 59.82 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 45.97 | 59.69 |
| Solyc06g083860.2.1 | Tomato | nucleus | 52.02 | 59.17 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 43.55 | 59.02 |
| Os01t0828900-00 | Rice | nucleus, plastid | 50.4 | 58.96 |
| CDY21126 | Canola | nucleus, plastid | 44.76 | 58.42 |
| CDY30000 | Canola | nucleus, plastid | 44.76 | 58.42 |
| PGSC0003DMT400029945 | Potato | nucleus | 42.74 | 57.92 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 41.94 | 57.78 |
| CDX74186 | Canola | nucleus, plastid | 43.95 | 57.37 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 43.95 | 57.37 |
| CDY63294 | Canola | nucleus | 42.34 | 57.07 |
| CDY49331 | Canola | nucleus, plastid | 44.35 | 56.12 |
| CDY42932 | Canola | nucleus, plastid | 44.35 | 55.84 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 45.16 | 55.72 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 43.95 | 55.33 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 45.56 | 54.07 |
| Solyc05g055020.2.1 | Tomato | nucleus | 45.97 | 54.03 |
| Os05t0472000-00 | Rice | nucleus | 48.39 | 50.42 |
| Os06t0672400-01 | Rice | nucleus | 52.82 | 47.29 |
| Os05t0347400-01 | Rice | nucleus | 50.0 | 43.66 |
| Os07t0139300-01 | Rice | nucleus | 44.35 | 39.86 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 44.76 | 37.37 |
| Os08t0248000-00 | Rice | nucleus | 27.82 | 34.16 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4331099 | EntrezGene:9266624 | ProteinID:AAG13584.1 | ProteinID:AAP54281.1 | EMBL:AB512494 |
| EMBL:AB512495 | EMBL:AK111446 | InterPro:ALOG_dom | ProteinID:BAD21590.1 | ProteinID:BAD22027.1 | ProteinID:BAF10387.1 |
| ProteinID:BAH94937.1 | ProteinID:BAS81516.1 | ProteinID:BAT11310.1 | ProteinID:EAZ16425.1 | ProteinID:EAZ25035.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 | EnsemblPlantsGene:Os02g0811000 | EnsemblPlants:Os02t0811000-01 | PFAM:PF04852 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF7 | UniProt:Q6K5X1 | UniParc:UPI0000377C4D | RefSeq:XP_015613424.1 |
| RefSeq:XP_015624971.1 | SEG:seg | : | : | : | : |
Description
G1 LIKE PROTEIN 6DUF640 domain containing protein, ALOG domain-containing nuclear protein, Reguration of plant height, floral development and grain yield, Spikelet morphogenesis (Os02t0811000-01)
Coordinates
chr2:-:34687624..34689723
Molecular Weight (calculated)
25887.1 Da
IEP (calculated)
9.968
GRAVY (calculated)
-0.720
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRHHHHHHH HHHHMMSGGG QDPAAGDGGA GGATQDSFFL GPAAAAMFSG AGSSSSGAGT SAGGGGGGPS PSSSSPSLSR YESQKRRDWN TFGQYLRNHR
101: PPLSLSRCSG AHVLEFLKYM DQFGKTKVHT PVCPFYGHPN PPAPCPCPLR QAWGSLDALI GRLRAAYEEN GGTPEMNPFG ARAVRLYLRE VRETQARARG
201: ISYEKKKRKK PSSAGAGAGP SSEGSPPPPG GSASGGGDTS ASPQFIIP
101: PPLSLSRCSG AHVLEFLKYM DQFGKTKVHT PVCPFYGHPN PPAPCPCPLR QAWGSLDALI GRLRAAYEEN GGTPEMNPFG ARAVRLYLRE VRETQARARG
201: ISYEKKKRKK PSSAGAGAGP SSEGSPPPPG GSASGGGDTS ASPQFIIP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.