Factsheet for Os05t0472000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0828900-00	Rice	nucleus, plastid	68.07	76.42
HORVU1Hr1G070480.1	Barley	nucleus	71.01	72.84
TraesCS1D01G294600.2	Wheat	nucleus, plastid	70.59	72.1
TraesCS1B01G305800.1	Wheat	nucleus	70.59	70.59
Zm00001d038442_P001	Maize	nucleus	72.69	70.04
TraesCS1A01G296900.1	Wheat	nucleus, plastid	70.17	68.44
EES18364	Sorghum	nucleus	72.27	66.93
Zm00001d010596_P001	Maize	nucleus	68.49	65.99
GSMUA_Achr11P...	Banana	nucleus	44.54	60.23
GSMUA_AchrUn_...	Banana	nucleus	46.22	59.14
Os02t0166800-01	Rice	nucleus	47.06	58.64
Os10t0478000-01	Rice	nucleus	50.0	58.33
Os04t0516200-01	Rice	nucleus	47.9	56.44
Os02t0623400-00	Rice	nucleus	46.64	53.11
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	44.96	51.69
Os05t0347400-01	Rice	nucleus	60.92	51.06
Os02t0811000-01	Rice	nucleus	50.42	48.39
GSMUA_Achr11P...	Banana	nucleus	41.18	48.28
Os06t0672400-01	Rice	nucleus	52.94	45.49
Os07t0139300-01	Rice	nucleus	42.86	36.96
Os08t0248000-00	Rice	nucleus	28.99	34.16

Protein Annotations

EntrezGene:107278201	MapMan:35.1	ProteinID:AAT93958.1	ProteinID:AAT94018.1	EMBL:AB512497	InterPro:ALOG_dom
EMBL:AP008211	ProteinID:BAS94497.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299
GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009987	GO:GO:0090698	InterPro:IPR006936
EnsemblPlantsGene:Os05g0472000	EnsemblPlants:Os05t0472000-00	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF18
UniProt:Q6ATW6	UniParc:UPI0000403654	RefSeq:XP_015638254.1	SEG:seg	:	:

Description

G1L8Similar to LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6). (Os05t0472000-00)

Coordinates

chr5:+:23178205..23178921

Molecular Weight (calculated)

24726.9 Da

IEP (calculated)

10.148

GRAVY (calculated)

-0.620

Length

238 amino acids

Sequence
(BLAST)

001: MEGGGGGADG QAQPVAQAPP AMQPMQQLSR YESQKRRDWN TFLQYLKNHR PPLTLARCSG AHVIEFLKYL DQFGKTKVHA SGCAYYGQPS PPAPCPCPLR
101: QAWGSLDALI GRLRAAYEES GHAPESNPFA ARAVRIYLRE VRDAQAKARG IPYEKKKRKR TQQQQPPPPP PPPPQHQPGA AAGEASSSSS AAAAAVAAEG
201: SGSSAAAAAA TSQTGGGGGG STTTTTASAA APTTATRV

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.