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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G294600.2 Wheat nucleus, plastid 96.64 98.71
TraesCS1A01G296900.1 Wheat nucleus, plastid 95.8 93.44
HORVU1Hr1G070480.1 Barley nucleus 90.76 93.1
Os05t0472000-00 Rice nucleus 70.59 70.59
TraesCS3B01G381000.1 Wheat cytosol, nucleus, plastid 62.6 70.28
Zm00001d010596_P001 Maize nucleus 69.75 67.21
Zm00001d038442_P001 Maize nucleus 68.07 65.59
EES18364 Sorghum nucleus 70.59 65.37
GSMUA_Achr11P... Banana nucleus 45.38 61.36
GSMUA_AchrUn_... Banana nucleus 46.64 59.68
TraesCS2B01G399800.1 Wheat nucleus 49.58 58.71
TraesCS6B01G256500.1 Wheat nucleus 47.9 57.0
TraesCS1B01G172100.1 Wheat nucleus 47.48 54.85
TraesCS1B01G235800.1 Wheat nucleus 62.18 52.3
GSMUA_Achr7P22390_001 Banana endoplasmic reticulum, nucleus 44.96 51.69
TraesCS6B01G414700.1 Wheat nucleus 52.52 49.6
GSMUA_Achr11P... Banana nucleus 41.18 48.28
TraesCS6B01G168300.1 Wheat nucleus, plastid 51.26 46.92
TraesCS7B01G367400.1 Wheat nucleus 52.1 46.27
TraesCS2B01G267400.1 Wheat nucleus 44.96 41.63
Protein Annotations
EnsemblPlants:TraesCS1B01G305800.1EnsemblPlantsGene:TraesCS1B01G305800InterPro:ALOG_domInterPro:IPR006936PANTHER:PTHR31165PANTHER:PTHR31165:SF18
PFAM:PF04852PFscan:PS51697SEG:segMapMan:35.1::
Description
No Description!
Coordinates
chr1B:+:529288091..529288807
Molecular Weight (calculated)
24871.1 Da
IEP (calculated)
10.108
GRAVY (calculated)
-0.660
Length
238 amino acids
Sequence
(BLAST)
001: MDSPGTAGPP SSSAGDAQQP VALAVAPPQP QPHPPPPQQQ LSRYESQKRR DWNTFLQYLR NHRPPLTLAR CSGAHVIEFL KYLDQFGKTK VHASGCAHYG
101: QPSPPAPCPC PLRQAWGSLD ALIGRLRAAY EESGHAPESN PFAARAVRIY LREVRDGQAK ARGIPYEKKK RKRTPALPAG GAGEGTNSSS AAAAVPGRGE
201: GGEQSGSGTA AASPLPSPTG AQAEGSSVTA APTSTSRV
Best Arabidopsis Sequence Match ( AT5G58500.1 )
(BLAST)
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Arabidopsis Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.