Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 96.64 | 98.71 |
TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 95.8 | 93.44 |
HORVU1Hr1G070480.1 | Barley | nucleus | 90.76 | 93.1 |
Os05t0472000-00 | Rice | nucleus | 70.59 | 70.59 |
TraesCS3B01G381000.1 | Wheat | cytosol, nucleus, plastid | 62.6 | 70.28 |
Zm00001d010596_P001 | Maize | nucleus | 69.75 | 67.21 |
Zm00001d038442_P001 | Maize | nucleus | 68.07 | 65.59 |
EES18364 | Sorghum | nucleus | 70.59 | 65.37 |
GSMUA_Achr11P... | Banana | nucleus | 45.38 | 61.36 |
GSMUA_AchrUn_... | Banana | nucleus | 46.64 | 59.68 |
TraesCS2B01G399800.1 | Wheat | nucleus | 49.58 | 58.71 |
TraesCS6B01G256500.1 | Wheat | nucleus | 47.9 | 57.0 |
TraesCS1B01G172100.1 | Wheat | nucleus | 47.48 | 54.85 |
TraesCS1B01G235800.1 | Wheat | nucleus | 62.18 | 52.3 |
GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 44.96 | 51.69 |
TraesCS6B01G414700.1 | Wheat | nucleus | 52.52 | 49.6 |
GSMUA_Achr11P... | Banana | nucleus | 41.18 | 48.28 |
TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 51.26 | 46.92 |
TraesCS7B01G367400.1 | Wheat | nucleus | 52.1 | 46.27 |
TraesCS2B01G267400.1 | Wheat | nucleus | 44.96 | 41.63 |
Protein Annotations
EnsemblPlants:TraesCS1B01G305800.1 | EnsemblPlantsGene:TraesCS1B01G305800 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 |
PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1B:+:529288091..529288807
Molecular Weight (calculated)
24871.1 Da
IEP (calculated)
10.108
GRAVY (calculated)
-0.660
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPGTAGPP SSSAGDAQQP VALAVAPPQP QPHPPPPQQQ LSRYESQKRR DWNTFLQYLR NHRPPLTLAR CSGAHVIEFL KYLDQFGKTK VHASGCAHYG
101: QPSPPAPCPC PLRQAWGSLD ALIGRLRAAY EESGHAPESN PFAARAVRIY LREVRDGQAK ARGIPYEKKK RKRTPALPAG GAGEGTNSSS AAAAVPGRGE
201: GGEQSGSGTA AASPLPSPTG AQAEGSSVTA APTSTSRV
101: QPSPPAPCPC PLRQAWGSLD ALIGRLRAAY EESGHAPESN PFAARAVRIY LREVRDGQAK ARGIPYEKKK RKRTPALPAG GAGEGTNSSS AAAAVPGRGE
201: GGEQSGSGTA AASPLPSPTG AQAEGSSVTA APTSTSRV
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Arabidopsis Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.