Factsheet for TraesCS2B01G267400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G254700.1	Wheat	nucleus	94.55	93.46
TraesCS2D01G255200.1	Wheat	nucleus	92.61	91.54
HORVU2Hr1G060890.2	Barley	nucleus, plastid	83.66	82.69
Zm00001d018775_P001	Maize	nucleus	58.75	58.98
Os07t0139300-01	Rice	nucleus	57.98	53.99
EER97956	Sorghum	mitochondrion, nucleus	59.53	53.87
TraesCS6B01G256500.1	Wheat	nucleus	40.86	52.5
TraesCS2B01G399800.1	Wheat	nucleus	40.08	51.24
PGSC0003DMT400054474	Potato	plastid	34.24	50.29
TraesCS1B01G172100.1	Wheat	nucleus	39.69	49.51
GSMUA_Achr4P31900_001	Banana	nucleus	35.41	48.4
Solyc02g069510.1.1	Tomato	nucleus	33.85	48.07
GSMUA_Achr9P30540_001	Banana	nucleus	34.24	47.57
GSMUA_Achr5P00260_001	Banana	nucleus	37.35	47.06
GSMUA_AchrUn_...	Banana	nucleus	37.35	46.15
TraesCS3B01G381000.1	Wheat	cytosol, nucleus, plastid	37.35	45.28
GSMUA_Achr11P...	Banana	nucleus	38.91	45.05
TraesCS1B01G305800.1	Wheat	nucleus	41.63	44.96
KRH58368	Soybean	nucleus	39.3	42.8
TraesCS6B01G168300.1	Wheat	nucleus, plastid	42.41	41.92
TraesCS7B01G367400.1	Wheat	nucleus	43.19	41.42
KRH42251	Soybean	plastid	39.3	40.89
TraesCS6B01G414700.1	Wheat	nucleus	40.08	40.87
TraesCS1B01G235800.1	Wheat	nucleus	39.69	36.04

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0048449	GO:GO:0090698	InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165
PANTHER:PTHR31165:SF5	EnsemblPlantsGene:TraesCS2B01G267400	EnsemblPlants:TraesCS2B01G267400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:-:360349817..360350590

Molecular Weight (calculated)

27488.8 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.427

Length

257 amino acids

Sequence
(BLAST)

001: MPATGEGPGA AQPAAARRPS RYESQKRRDW QTFVRYLAAH RPPLVLRRCS GAHVLEFLRY LDRFGKTRVH APPCPSYGVH AITATAPCPC PLRQAWGSLD
101: ALVGRLRAAF DERYSRSVSA PPPQQQDASC NPFAARAVRL YLRDVRDAQS RARGISYHKK KKKRKLATGS CTVEASSSKN GGCADGVRGH NTTTTMKANV
201: APVPQAPPPL PPLPPSLAGV PFECGSDTGS IVGGGGGSTG AGCYGGIYLR LFFNAFN

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.