CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42251	Soybean	plastid	93.22	89.07
PGSC0003DMT400054474	Potato	plastid	47.88	64.57
KRH42865	Soybean	plastid	44.92	63.47
Solyc02g069510.1.1	Tomato	nucleus	47.88	62.43
KRH34151	Soybean	plastid	46.19	61.93
KRG92413	Soybean	nucleus	50.0	61.46
KRH25774	Soybean	nucleus	44.92	59.89
Os02t0166800-01	Rice	nucleus	47.88	59.16
KRH67397	Soybean	nucleus	50.85	59.11
KRG95674	Soybean	nucleus	50.85	59.11
KRH34391	Soybean	nucleus	50.42	58.91
KRH27046	Soybean	nucleus	43.64	58.86
KRH22284	Soybean	nucleus	39.83	58.75
KRH55744	Soybean	nucleus	44.49	58.66
KRH21273	Soybean	nucleus	44.92	58.56
KRH27347	Soybean	nucleus	45.34	58.15
KRH11015	Soybean	nucleus	44.49	58.01
KRG92633	Soybean	nucleus	46.61	57.89
KRG97044	Soybean	plastid	44.49	57.38
KRH32192	Soybean	nucleus	50.0	57.0
KRH21973	Soybean	nucleus	45.76	55.67
KRH56293	Soybean	nucleus	49.58	55.45
KRH68792	Soybean	plastid	43.22	55.43
GSMUA_Achr4P31900_001	Banana	nucleus	43.64	54.79
KRH17088	Soybean	nucleus	50.0	54.13
KRH72732	Soybean	nucleus	50.0	53.88
GSMUA_Achr9P30540_001	Banana	nucleus	41.53	52.97
GSMUA_Achr5P00260_001	Banana	nucleus	45.34	52.45
KRG98226	Soybean	nucleus	49.58	50.43
KRH30185	Soybean	nucleus	50.0	50.21
GSMUA_AchrUn_...	Banana	nucleus	44.07	50.0
Zm00001d015342_P001	Maize	nucleus	50.0	47.77
GSMUA_Achr11P...	Banana	nucleus	44.92	47.75
TraesCS6B01G168300.1	Wheat	nucleus, plastid	50.85	46.15
TraesCS6D01G129400.1	Wheat	nucleus	50.42	45.95
TraesCS6A01G139700.1	Wheat	nucleus	50.42	45.95
EES04579	Sorghum	nucleus	50.0	45.74
TraesCS7B01G367400.1	Wheat	nucleus	51.27	45.15
TraesCS7A01G466000.1	Wheat	nucleus	50.85	44.78
HORVU7Hr1G106960.2	Barley	nucleus	50.85	44.61
Os06t0672400-01	Rice	nucleus	52.12	44.4
TraesCS7D01G453600.1	Wheat	nucleus	50.42	44.4
Zm00001d046998_P001	Maize	nucleus	51.69	44.04
Zm00001d036617_P001	Maize	nucleus	50.85	43.32
KXG34092	Sorghum	nucleus	50.85	42.55
OQU76862	Sorghum	nucleus	50.85	42.55
HORVU2Hr1G060890.2	Barley	nucleus, plastid	44.07	40.0
Zm00001d018775_P001	Maize	nucleus	43.22	39.84
TraesCS2A01G254700.1	Wheat	nucleus	43.64	39.62
TraesCS2B01G267400.1	Wheat	nucleus	42.8	39.3
TraesCS2D01G255200.1	Wheat	nucleus	42.37	38.46
Os07t0139300-01	Rice	nucleus	43.22	36.96
EER97956	Sorghum	mitochondrion, nucleus	44.07	36.62
Os08t0248000-00	Rice	nucleus	27.54	32.18

Protein Annotations

EntrezGene:100775838	MapMan:35.1	EMBL:ACUP02003254	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_05G123400	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936
UniProt:K7KPU7	EnsemblPlants:KRH58368	ProteinID:KRH58368	ProteinID:KRH58368.1	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF36	UniParc:UPI0002339826	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:31712533..31713735

Molecular Weight (calculated)

26095.5 Da

IEP (calculated)

9.364

GRAVY (calculated)

-0.719

Length

236 amino acids

Sequence
(BLAST)

001: MSAAVAATAA AAMSVYQHSS SSRQEQHRDH ELPLTPQRVC VSPPLSRYES QKRRDWNTFG QYLKNHRPPL TLSRCSGAHV LEFLRYLDQF GKTKVHAETC
101: AYFGNSHPPG PCACPLRQAW GSLDALIGRL RAAFEENGGT PEMNPFGTRA VRLYLREVRD AQAKARGIAY EKKKRRNKPQ HSGHDHHDEV MVNYSSGYGG
201: GFVPQQQMLS DSNGTASTSD GVSYFSSSSS QCGGFN

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.