CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21273	Soybean	nucleus	97.79	97.79
KRH42865	Soybean	plastid	74.03	80.24
VIT_10s0003g01280.t01	Wine grape	nucleus	75.14	77.71
KRH27046	Soybean	nucleus	70.72	73.14
PGSC0003DMT400026433	Potato	nucleus	74.03	70.16
Solyc02g076820.2.1	Tomato	plastid	74.03	69.79
KRH22284	Soybean	nucleus	61.33	69.38
KRH55744	Soybean	nucleus	67.96	68.72
KRH27347	Soybean	nucleus	69.06	67.93
KRH25774	Soybean	nucleus	65.75	67.23
KRH21973	Soybean	nucleus	68.51	63.92
AT4G18610.1	Thale cress	nucleus	64.09	60.73
CDY67351	Canola	nucleus	64.64	60.62
CDX77619	Canola	cytosol	32.6	60.2
CDX76510	Canola	nucleus	64.09	60.1
CDY34056	Canola	nucleus	64.09	60.1
CDX78877	Canola	nucleus	64.64	59.69
Bra021000.1-P	Field mustard	nucleus, plastid	63.54	59.59
CDX87760	Canola	nucleus	59.12	59.44
CDY01557	Canola	nucleus	62.43	59.16
Bra013330.1-P	Field mustard	nucleus	63.54	58.67
Bra021995.1-P	Field mustard	nucleus	58.56	58.56
CDY06030	Canola	nucleus	58.56	58.56
KRH34151	Soybean	plastid	54.7	56.25
KRG92413	Soybean	nucleus	59.12	55.73
KRG92633	Soybean	nucleus	57.46	54.74
KRG97044	Soybean	plastid	54.7	54.1
KRH68792	Soybean	plastid	54.7	53.8
KRH34391	Soybean	nucleus	56.91	50.99
KRH32192	Soybean	nucleus	58.01	50.72
KRH67397	Soybean	nucleus	56.35	50.25
KRG95674	Soybean	nucleus	56.35	50.25
KRH56293	Soybean	nucleus	57.46	49.29
KRH17088	Soybean	nucleus	57.46	47.71
KRH72732	Soybean	nucleus	56.91	47.03
KRH30185	Soybean	nucleus	59.67	45.96
KRG98226	Soybean	nucleus	58.01	45.26
KRH58368	Soybean	nucleus	58.01	44.49
KRH42251	Soybean	plastid	58.01	42.51

Protein Annotations

EntrezGene:100306082	MapMan:35.1	EMBL:ACUP02009170	InterPro:ALOG_dom	EMBL:BT090007	UniProt:C6SXW0
EnsemblPlantsGene:GLYMA_15G082800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628
GO:GO:0009987	InterPro:IPR006936	EnsemblPlants:KRH11015	ProteinID:KRH11015	ProteinID:KRH11015.1	PFAM:PF04852
PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF8	UniParc:UPI0001B154BF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:6319430..6327833

Molecular Weight (calculated)

20216.9 Da

IEP (calculated)

10.168

GRAVY (calculated)

-0.794

Length

181 amino acids

Sequence
(BLAST)

001: MSGEMHTDSA SSSRAAATSD QRHQQPAAAP LSRYESQKRR DWNTFGQYLK NQTPPVSLSQ CNFNHVLEFL RYLDQFGKTK VHLHGCIFFG QPDPPAPCTC
101: PLRQAWGSLD ALIGRLRAAY EEHGGSAETN PFGSGAIRVY LREVKECQAK ARGIPYTKKK KKKNQLKGPH DAPKSFKQLA T

Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)

001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T

Arabidopsis Description

LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.