Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 75.43 | 79.04 |
| KRH42865 | Soybean | plastid | 73.14 | 76.65 |
| KRH21273 | Soybean | nucleus | 77.71 | 75.14 |
| KRH11015 | Soybean | nucleus | 77.71 | 75.14 |
| PGSC0003DMT400026433 | Potato | nucleus | 80.0 | 73.3 |
| Solyc02g076820.2.1 | Tomato | plastid | 80.0 | 72.92 |
| CDY01557 | Canola | nucleus | 66.86 | 61.26 |
| CDX87760 | Canola | nucleus | 62.29 | 60.56 |
| AT4G18610.1 | Thale cress | nucleus | 65.71 | 60.21 |
| CDX77619 | Canola | cytosol | 33.71 | 60.2 |
| CDY67351 | Canola | nucleus | 65.71 | 59.59 |
| CDY06030 | Canola | nucleus | 61.14 | 59.12 |
| Bra021995.1-P | Field mustard | nucleus | 61.14 | 59.12 |
| CDY34056 | Canola | nucleus | 65.14 | 59.07 |
| CDX76510 | Canola | nucleus | 65.14 | 59.07 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 61.71 | 59.02 |
| CDX78877 | Canola | nucleus | 65.71 | 58.67 |
| Bra021000.1-P | Field mustard | nucleus, plastid | 64.57 | 58.55 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 73.14 | 58.18 |
| Bra013330.1-P | Field mustard | nucleus | 64.57 | 57.65 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 59.43 | 54.45 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 60.57 | 52.74 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 62.29 | 47.19 |
| VIT_10s0003g05690.t01 | Wine grape | plastid | 62.29 | 43.95 |
Protein Annotations
| EntrezGene:100254926 | MapMan:35.1 | InterPro:ALOG_dom | EMBL:AM453755 | ProteinID:CAN72178 | ProteinID:CAN72178.1 |
| ProteinID:CCB55685 | ProteinID:CCB55685.1 | UniProt:F6HM97 | EMBL:FN595992 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | PFAM:PF04852 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 | TIGR:TC52387 | UniParc:UPI00019840AA | ArrayExpress:VIT_10s0003g01280 |
| EnsemblPlantsGene:VIT_10s0003g01280 | EnsemblPlants:VIT_10s0003g01280.t01 | unigene:Vvi.16706 | RefSeq:XP_010655519.1 | RefSeq:XP_010655520.1 | SEG:seg |
Description
No Description!
Coordinates
chr10:+:2619192..2630377
Molecular Weight (calculated)
19834.4 Da
IEP (calculated)
10.347
GRAVY (calculated)
-1.083
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDRKRDSA EGSSRSTGEP QQQPQPLSRY ESQKRRDWNT FGQYLKNQRP PVSLAQCSCN HVLEFLRYLD QFGKTKVHLH GCVFFGQPDP PAPCTCPLRQ
101: AWGSLDALIG RLRAAYEEHG GSPETNPFGN GAIRVYLREV RDCQSKARGI PYKKKKKKKN QIKPNNEAKS SKQSA
101: AWGSLDALIG RLRAAYEEHG GSPETNPFGN GAIRVYLREV RDCQSKARGI PYKKKKKKKN QIKPNNEAKS SKQSA
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.