CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11015	Soybean	nucleus	97.79	97.79
KRH42865	Soybean	plastid	74.03	80.24
VIT_10s0003g01280.t01	Wine grape	nucleus	75.14	77.71
KRH27046	Soybean	nucleus	71.27	73.71
PGSC0003DMT400026433	Potato	nucleus	74.59	70.68
Solyc02g076820.2.1	Tomato	plastid	74.59	70.31
KRH22284	Soybean	nucleus	61.88	70.0
KRH55744	Soybean	nucleus	68.51	69.27
KRH27347	Soybean	nucleus	69.61	68.48
KRH25774	Soybean	nucleus	66.3	67.8
KRH21973	Soybean	nucleus	69.06	64.43
AT4G18610.1	Thale cress	nucleus	64.09	60.73
CDY67351	Canola	nucleus	64.64	60.62
CDX76510	Canola	nucleus	64.09	60.1
CDY34056	Canola	nucleus	64.09	60.1
CDX78877	Canola	nucleus	64.64	59.69
Bra021000.1-P	Field mustard	nucleus, plastid	63.54	59.59
CDX77619	Canola	cytosol	32.04	59.18
CDY01557	Canola	nucleus	62.43	59.16
CDX87760	Canola	nucleus	58.56	58.89
Bra013330.1-P	Field mustard	nucleus	63.54	58.67
Bra021995.1-P	Field mustard	nucleus	58.01	58.01
CDY06030	Canola	nucleus	58.01	58.01
KRH34151	Soybean	plastid	55.25	56.82
KRG92413	Soybean	nucleus	59.67	56.25
KRG92633	Soybean	nucleus	58.01	55.26
KRG97044	Soybean	plastid	55.25	54.64
KRH68792	Soybean	plastid	54.14	53.26
KRH34391	Soybean	nucleus	57.46	51.49
KRH32192	Soybean	nucleus	58.56	51.21
KRH67397	Soybean	nucleus	56.91	50.74
KRG95674	Soybean	nucleus	56.91	50.74
KRH56293	Soybean	nucleus	58.01	49.76
KRH17088	Soybean	nucleus	58.01	48.17
KRH72732	Soybean	nucleus	57.46	47.49
KRH30185	Soybean	nucleus	60.22	46.38
KRG98226	Soybean	nucleus	58.56	45.69
KRH58368	Soybean	nucleus	58.56	44.92
KRH42251	Soybean	plastid	58.56	42.91

Protein Annotations

EntrezGene:100778886	MapMan:35.1	EMBL:ACUP02008352	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_13G229700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	UniProt:I1M1T9
InterPro:IPR006936	EnsemblPlants:KRH21273	ProteinID:KRH21273	ProteinID:KRH21273.1	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF8	UniParc:UPI000233ADD1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:34177848..34183941

Molecular Weight (calculated)

20244.1 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.777

Length

181 amino acids

Sequence
(BLAST)

001: MSGEMHTDSA SSSRAAAASD QRHQQPAAAP LSRYESQKRR DWNTFGQYLK NQTPPVSLSQ CNFNHVLEFL RYLDQFGKTK VHLHGCIFFG QPDPPAPCTC
101: PLRQAWGSLD ALIGRLRAAY EERGGSPETN PFGSGAIRVY LREVKECQAK ARGIPYIKKK KKKNQLKGPH DAPKSFKQLA T

Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)

001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T

Arabidopsis Description

LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.