Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55744 | Soybean | nucleus | 96.05 | 94.97 |
| KRH27046 | Soybean | nucleus | 84.18 | 85.14 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 78.53 | 83.23 |
| KRH22284 | Soybean | nucleus | 74.58 | 82.5 |
| Bra004711.1-P | Field mustard | nucleus | 74.01 | 78.44 |
| Bra000269.1-P | Field mustard | nucleus | 77.4 | 77.4 |
| PGSC0003DMT400052658 | Potato | nucleus | 74.58 | 76.3 |
| AT2G42610.1 | Thale cress | nucleus | 76.27 | 76.27 |
| Bra016865.1-P | Field mustard | nucleus | 75.71 | 76.14 |
| CDY47983 | Canola | nucleus | 75.71 | 76.14 |
| CDY14848 | Canola | nucleus | 75.71 | 75.71 |
| CDY55387 | Canola | nucleus | 75.71 | 75.28 |
| KRH42865 | Soybean | plastid | 69.49 | 73.65 |
| Solyc10g008000.1.1 | Tomato | nucleus | 71.19 | 70.79 |
| PGSC0003DMT400027334 | Potato | nucleus | 70.62 | 70.22 |
| KRH27347 | Soybean | nucleus | 70.62 | 67.93 |
| KRH21273 | Soybean | nucleus | 67.8 | 66.3 |
| KRH21973 | Soybean | nucleus | 72.32 | 65.98 |
| KRH11015 | Soybean | nucleus | 67.23 | 65.75 |
| KRH34151 | Soybean | plastid | 55.37 | 55.68 |
| KRG92413 | Soybean | nucleus | 58.19 | 53.65 |
| KRG92633 | Soybean | nucleus | 55.93 | 52.11 |
| KRG97044 | Soybean | plastid | 53.67 | 51.91 |
| KRH68792 | Soybean | plastid | 53.11 | 51.09 |
| KRH34391 | Soybean | nucleus | 58.19 | 50.99 |
| KRH32192 | Soybean | nucleus | 59.32 | 50.72 |
| KRG95674 | Soybean | nucleus | 57.06 | 49.75 |
| KRH67397 | Soybean | nucleus | 57.06 | 49.75 |
| KRH56293 | Soybean | nucleus | 58.76 | 49.29 |
| KRH58368 | Soybean | nucleus | 59.89 | 44.92 |
| KRH17088 | Soybean | nucleus | 54.24 | 44.04 |
| KRH72732 | Soybean | nucleus | 53.67 | 43.38 |
| KRG98226 | Soybean | nucleus | 56.5 | 43.1 |
| KRH42251 | Soybean | plastid | 59.89 | 42.91 |
| KRH30185 | Soybean | nucleus | 55.93 | 42.13 |
Protein Annotations
| EntrezGene:100806134 | MapMan:35.1 | EMBL:ACUP02007321 | InterPro:ALOG_dom | EnsemblPlantsGene:GLYMA_12G128100 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | UniProt:I1LSG2 |
| InterPro:IPR006936 | EnsemblPlants:KRH25774 | ProteinID:KRH25774 | ProteinID:KRH25774.1 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF10 | UniParc:UPI000233CA24 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr12:+:14053897..14057570
Molecular Weight (calculated)
19894.3 Da
IEP (calculated)
9.208
GRAVY (calculated)
-0.850
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGSHGTE GSSSNIPIEY QQQQQSPVTL SRYESQKRRD WNTFGQYLKN QRPPVPLSQC NCNHVLDFLR YLDQFGKTKV HLQGCMFYGQ PEPPAPCACP
101: LRQAWGSLDA LIGRLRAAYE ENGGSPETNP FASGSIRVYL REVRECQAKA RGIAYKKKKK TTKENAEESS NSSIHFS
101: LRQAWGSLDA LIGRLRAAYE ENGGSPETNP FASGSIRVYL REVRECQAKA RGIAYKKKKK TTKENAEESS NSSIHFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.