Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67397 | Soybean | nucleus | 99.01 | 99.01 |
| GSMUA_Achr11P... | Banana | nucleus | 38.92 | 84.04 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 75.37 | 83.61 |
| Solyc09g025280.1.1 | Tomato | nucleus | 67.49 | 80.12 |
| KRH32192 | Soybean | nucleus | 80.79 | 79.23 |
| KRH56293 | Soybean | nucleus | 80.3 | 77.25 |
| PGSC0003DMT400026698 | Potato | nucleus | 67.98 | 74.59 |
| KRG92413 | Soybean | nucleus | 68.97 | 72.92 |
| Zm00001d025863_P001 | Maize | nucleus | 59.11 | 71.43 |
| KRH34151 | Soybean | plastid | 61.58 | 71.02 |
| KRH34391 | Soybean | nucleus | 69.95 | 70.3 |
| PGSC0003DMT400051692 | Potato | nucleus | 69.46 | 67.79 |
| KRG92633 | Soybean | nucleus | 62.56 | 66.84 |
| EES11114 | Sorghum | nucleus | 65.02 | 66.33 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 56.16 | 66.28 |
| KRG97044 | Soybean | plastid | 59.61 | 66.12 |
| Zm00001d003057_P001 | Maize | nucleus | 65.02 | 66.0 |
| Bra018263.1-P | Field mustard | nucleus | 69.46 | 65.58 |
| CDY24755 | Canola | nucleus, plastid | 69.46 | 65.58 |
| CDY10790 | Canola | nucleus | 69.46 | 65.58 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 55.17 | 65.12 |
| Solyc06g083860.2.1 | Tomato | nucleus | 69.46 | 64.68 |
| CDY15426 | Canola | nucleus | 68.97 | 64.52 |
| CDY57087 | Canola | nucleus | 68.97 | 64.52 |
| Bra021707.1-P | Field mustard | nucleus | 68.97 | 64.52 |
| CDY57088 | Canola | nucleus | 68.97 | 64.52 |
| AT2G31160.1 | Thale cress | nucleus | 69.46 | 64.38 |
| Os04t0516200-01 | Rice | nucleus | 64.04 | 64.36 |
| KRH68792 | Soybean | plastid | 58.13 | 64.13 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 62.56 | 63.82 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 63.05 | 63.68 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 54.19 | 63.58 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 62.56 | 63.5 |
| Zm00001d017263_P001 | Maize | nucleus | 63.55 | 63.24 |
| Os10t0478000-01 | Rice | nucleus | 63.55 | 63.24 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 62.56 | 63.18 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 62.56 | 62.87 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 62.56 | 62.87 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 62.07 | 62.69 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 63.55 | 62.62 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 63.55 | 62.62 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 53.2 | 62.43 |
| Zm00001d014032_P001 | Maize | nucleus | 64.53 | 62.38 |
| Zm00001d051143_P001 | Maize | nucleus | 62.07 | 62.38 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 62.56 | 62.25 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 50.25 | 62.2 |
| KRH42865 | Soybean | plastid | 50.74 | 61.68 |
| Zm00001d032696_P001 | Maize | nucleus | 64.53 | 61.5 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 52.71 | 61.14 |
| KXG30661 | Sorghum | nucleus | 62.56 | 61.06 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 48.28 | 60.87 |
| Os02t0623400-00 | Rice | nucleus | 62.56 | 60.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.83 | 59.09 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 53.2 | 59.02 |
| KXG38327 | Sorghum | nucleus | 64.04 | 58.3 |
| KRH27046 | Soybean | nucleus | 50.25 | 58.29 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 64.04 | 57.27 |
| KRH25774 | Soybean | nucleus | 49.75 | 57.06 |
| KRH21273 | Soybean | nucleus | 50.74 | 56.91 |
| KRH27347 | Soybean | nucleus | 51.23 | 56.52 |
| KRH11015 | Soybean | nucleus | 50.25 | 56.35 |
| KRH55744 | Soybean | nucleus | 49.26 | 55.87 |
| KRH22284 | Soybean | nucleus | 43.84 | 55.62 |
| Zm00001d051966_P001 | Maize | nucleus | 67.0 | 55.28 |
| Zm00001d018433_P001 | Maize | nucleus | 66.5 | 54.66 |
| EES05986 | Sorghum | nucleus | 66.5 | 53.78 |
| Os02t0811000-01 | Rice | nucleus | 65.52 | 53.63 |
| KRH21973 | Soybean | nucleus | 51.23 | 53.61 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 63.55 | 53.53 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 66.01 | 53.17 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 66.01 | 53.17 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 66.01 | 53.17 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 65.02 | 51.56 |
| KRH17088 | Soybean | nucleus | 55.17 | 51.38 |
| KRH72732 | Soybean | nucleus | 55.17 | 51.14 |
| KRG98226 | Soybean | nucleus | 58.13 | 50.86 |
| KRH58368 | Soybean | nucleus | 59.11 | 50.85 |
| KRH30185 | Soybean | nucleus | 57.14 | 49.36 |
| KRH42251 | Soybean | plastid | 58.62 | 48.18 |
Protein Annotations
| EntrezGene:100527164 | MapMan:35.1 | EMBL:ACUP02012130 | InterPro:ALOG_dom | EMBL:BT091987 | UniProt:C6T3H6 |
| EnsemblPlantsGene:GLYMA_19G165300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 |
| GO:GO:0009987 | InterPro:IPR006936 | EnsemblPlants:KRG95674 | ProteinID:KRG95674 | ProteinID:KRG95674.1 | PFAM:PF04852 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF38 | UniParc:UPI0001B1547A | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr19:+:42609837..42611632
Molecular Weight (calculated)
22520.6 Da
IEP (calculated)
10.022
GRAVY (calculated)
-0.748
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNIQDFID TCNSDNTCNL ITNSTTTNLT AASAASSSPA STSITSSSRY ENQKRRDWNT FGQYLKNHRP PLSLSRCSGA HVLEFLRYLD QFGKTKVHTP
101: ICPFYGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAFEENG GKPEANPFGA RAVRLYLREV RDLQSKARGI SYEKKKRKRP PPQQQPMPIP HHPLPPPGAS
201: ATH
101: ICPFYGHPNP PAPCPCPLRQ AWGSLDALIG RLRAAFEENG GKPEANPFGA RAVRLYLREV RDLQSKARGI SYEKKKRKRP PPQQQPMPIP HHPLPPPGAS
201: ATH
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.