Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G378900.1 | Wheat | nucleus | 86.63 | 87.06 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 85.15 | 86.43 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 85.64 | 86.07 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 85.64 | 86.07 |
| GSMUA_Achr11P... | Banana | nucleus | 39.11 | 84.04 |
| KXG30661 | Sorghum | nucleus | 83.17 | 80.77 |
| Os02t0623400-00 | Rice | nucleus | 83.17 | 80.38 |
| Os10t0478000-01 | Rice | nucleus | 74.75 | 74.02 |
| Bra023738.1-P | Field mustard | plastid | 61.88 | 71.02 |
| Solyc09g025280.1.1 | Tomato | nucleus | 59.41 | 70.18 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 63.37 | 69.95 |
| KRH34151 | Soybean | plastid | 60.4 | 69.32 |
| CDY69731 | Canola | plastid | 64.36 | 66.67 |
| CDY35523 | Canola | plastid | 64.36 | 66.67 |
| KRG92413 | Soybean | nucleus | 62.87 | 66.15 |
| KRG97044 | Soybean | plastid | 59.9 | 66.12 |
| KRG92633 | Soybean | nucleus | 61.88 | 65.79 |
| AT3G23290.2 | Thale cress | plastid | 63.37 | 65.64 |
| PGSC0003DMT400026698 | Potato | nucleus | 59.9 | 65.41 |
| KRH34391 | Soybean | nucleus | 64.36 | 64.36 |
| KRH32192 | Soybean | nucleus | 65.84 | 64.25 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 63.86 | 64.18 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 54.95 | 64.16 |
| KRH68792 | Soybean | plastid | 58.42 | 64.13 |
| KRH67397 | Soybean | nucleus | 64.36 | 64.04 |
| KRG95674 | Soybean | nucleus | 64.36 | 64.04 |
| CDX77531 | Canola | plastid | 62.87 | 63.82 |
| CDX85083 | Canola | plastid | 62.87 | 63.82 |
| Bra014935.1-P | Field mustard | plastid | 62.87 | 63.82 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.96 | 63.37 |
| Os02t0166800-01 | Rice | nucleus | 59.9 | 63.35 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 59.9 | 63.35 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 63.37 | 63.05 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 53.96 | 63.01 |
| KRH56293 | Soybean | nucleus | 65.35 | 62.56 |
| Solyc09g090180.1.1 | Tomato | plastid | 63.86 | 62.02 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 57.92 | 61.58 |
| CDY52479 | Canola | nucleus, plastid | 57.92 | 61.58 |
| CDX86199 | Canola | plastid | 58.42 | 61.46 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 52.97 | 61.14 |
| PGSC0003DMT400051692 | Potato | nucleus | 62.87 | 61.06 |
| CDY57024 | Canola | nucleus, plastid | 57.43 | 60.42 |
| Bra009997.1-P | Field mustard | plastid | 57.43 | 60.42 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 56.93 | 60.21 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 56.93 | 59.9 |
| CDY05593 | Canola | nucleus, plastid | 56.44 | 59.69 |
| CDY52505 | Canola | nucleus, plastid | 56.44 | 59.69 |
| Solyc06g083860.2.1 | Tomato | nucleus | 64.36 | 59.63 |
| CDY64755 | Canola | nucleus, plastid | 55.94 | 58.85 |
| CDY63294 | Canola | nucleus | 52.97 | 58.15 |
| Bra018263.1-P | Field mustard | nucleus | 61.88 | 58.14 |
| CDY10790 | Canola | nucleus | 61.88 | 58.14 |
| CDY24755 | Canola | nucleus, plastid | 61.88 | 58.14 |
| CDY15426 | Canola | nucleus | 62.38 | 58.06 |
| CDY57088 | Canola | nucleus | 62.38 | 58.06 |
| CDY57087 | Canola | nucleus | 62.38 | 58.06 |
| Bra021707.1-P | Field mustard | nucleus | 62.38 | 58.06 |
| CDX74186 | Canola | nucleus, plastid | 54.46 | 57.89 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 54.46 | 57.89 |
| Os01t0828900-00 | Rice | nucleus, plastid | 60.4 | 57.55 |
| AT2G31160.1 | Thale cress | nucleus | 61.88 | 57.08 |
| CDY21126 | Canola | nucleus, plastid | 53.47 | 56.84 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 51.49 | 56.83 |
| PGSC0003DMT400029945 | Potato | nucleus | 51.49 | 56.83 |
| CDY30000 | Canola | nucleus, plastid | 52.97 | 56.32 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 50.0 | 56.11 |
| CDY49331 | Canola | nucleus, plastid | 53.96 | 55.61 |
| CDY42932 | Canola | nucleus, plastid | 53.96 | 55.33 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.95 | 55.22 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 53.47 | 54.82 |
| Os02t0811000-01 | Rice | nucleus | 65.35 | 53.23 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 54.46 | 52.63 |
| Solyc05g055020.2.1 | Tomato | nucleus | 54.95 | 52.61 |
| Os05t0472000-00 | Rice | nucleus | 56.44 | 47.9 |
| Os06t0672400-01 | Rice | nucleus | 62.87 | 45.85 |
| Os05t0347400-01 | Rice | nucleus | 58.42 | 41.55 |
| Os07t0139300-01 | Rice | nucleus | 52.97 | 38.77 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 53.47 | 36.36 |
| Os08t0248000-00 | Rice | nucleus | 31.68 | 31.68 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4336401 | EMBL:AB512493 | EMBL:AK243311 | InterPro:ALOG_dom | ProteinID:BAF15227.1 |
| ProteinID:BAS90081.1 | ProteinID:CAE02351.2 | ProteinID:EAZ31342.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | EnsemblPlantsGene:Os04g0516200 | EnsemblPlants:Os04t0516200-01 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF12 | UniProt:Q7XRS1 | UniParc:UPI00001B137A | RefSeq:XP_015635255.1 | RefSeq:XP_015635256.1 | SEG:seg |
Description
G1 LIKE PROTEIN 4Protein of unknown function DUF640 domain containing protein. (Os04t0516200-01)
Coordinates
chr4:-:25790019..25791505
Molecular Weight (calculated)
21674.4 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.878
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSPNPDSP PSGGGNGGGG GSSSSNSSPS MGAGAPQSPS RYEAQKRRDW NTFGQYLRNH RPPLSLAQCS GAHVLEFLRY LDQFGKTKVH TAACPFFGHP
101: SPPAPCPCPL RQAWGSLDAL VGRLRAAFEE NGGRPESNPF AARAVRLYLR EVREHQARAR GVSYEKKKRK KPQQQQLQGG DSSGLHGHQH HPPPPPPAGA
201: AC
101: SPPAPCPCPL RQAWGSLDAL VGRLRAAFEE NGGRPESNPF AARAVRLYLR EVREHQARAR GVSYEKKKRK KPQQQQLQGG DSSGLHGHQH HPPPPPPAGA
201: AC
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.