CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84366
CDY00336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	CDX84366	AT5G62920.1	18642946
AT5G28490.1	CDY00336	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57024	Canola	nucleus, plastid	97.4	97.4
Bra036134.1-P	Field mustard	nucleus, plastid	96.88	96.88
CDY52479	Canola	nucleus, plastid	92.71	93.68
CDX86199	Canola	plastid	92.71	92.71
AT5G28490.1	Thale cress	nucleus, plastid	91.67	92.63
CDY05593	Canola	nucleus, plastid	91.15	91.62
CDY52505	Canola	nucleus, plastid	90.62	91.1
CDY49331	Canola	nucleus, plastid	79.69	78.06
CDY42932	Canola	nucleus, plastid	79.69	77.67
CDY21126	Canola	nucleus, plastid	75.0	75.79
CDX74186	Canola	nucleus, plastid	73.96	74.74
CDY30000	Canola	nucleus, plastid	73.96	74.74
CDY63294	Canola	nucleus	70.31	73.37
GSMUA_Achr11P...	Banana	nucleus	35.42	72.34
KRH34151	Soybean	plastid	63.54	69.32
Zm00001d025863_P001	Maize	nucleus	58.33	66.67
VIT_14s0036g00540.t01	Wine grape	plastid	66.15	66.49
KRG97044	Soybean	plastid	62.5	65.57
KRG92633	Soybean	nucleus	63.54	64.21
CDY69731	Canola	plastid	64.06	63.08
KRH68792	Soybean	plastid	60.42	63.04
CDY35523	Canola	plastid	63.54	62.56
CDY10712	Canola	cytosol, nucleus, plastid	53.65	62.42
PGSC0003DMT400060169	Potato	nucleus, plastid	67.19	61.72
CDX77531	Canola	plastid	63.54	61.31
CDX85083	Canola	plastid	63.54	61.31
Solyc04g009980.2.1	Tomato	nucleus, plastid	57.29	61.11
CDY02038	Canola	cytosol	51.56	60.37
Solyc05g055020.2.1	Tomato	nucleus	66.15	60.19
PGSC0003DMT400029945	Potato	nucleus	56.77	59.56
GSMUA_Achr5P18640_001	Banana	nucleus	53.12	59.3
EES11114	Sorghum	nucleus	59.9	57.79
CDY32697	Canola	nucleus	53.12	57.63
Zm00001d003057_P001	Maize	nucleus	59.9	57.5
HORVU2Hr1G089190.1	Barley	nucleus	58.85	56.78
TraesCS6B01G256500.1	Wheat	nucleus	58.85	56.5
TraesCS6A01G225000.1	Wheat	nucleus	59.38	56.44
TraesCS6D01G209700.1	Wheat	nucleus	59.38	56.44
Os10t0478000-01	Rice	nucleus	59.9	56.37
CDY59510	Canola	nucleus	53.12	56.35
CDY10790	Canola	nucleus	63.02	56.28
TraesCS2D01G378900.1	Wheat	nucleus	58.85	56.22
GSMUA_Achr1P05650_001	Banana	nucleus	47.92	56.1
GSMUA_Achr5P03870_001	Banana	nucleus	50.52	56.07
GSMUA_Achr5P14570_001	Banana	nucleus	50.52	56.07
Os04t0516200-01	Rice	nucleus	58.85	55.94
Zm00001d051143_P001	Maize	nucleus	58.85	55.94
HORVU6Hr1G058340.2	Barley	nucleus	59.38	55.88
Zm00001d017263_P001	Maize	nucleus	59.38	55.88
KXG30661	Sorghum	nucleus	60.42	55.77
CDY57087	Canola	nucleus	63.02	55.76
CDY57088	Canola	nucleus	63.02	55.76
TraesCS2A01G382500.1	Wheat	nucleus	58.33	55.72
TraesCS2B01G399800.1	Wheat	nucleus	58.33	55.72
CDY24755	Canola	nucleus, plastid	61.98	55.35
TraesCS1B01G172100.1	Wheat	nucleus	59.38	55.34
TraesCS1D01G153700.1	Wheat	nucleus	59.38	55.34
CDY15426	Canola	nucleus	62.5	55.3
CDY47983	Canola	nucleus	50.52	55.11
CDY55387	Canola	nucleus	51.04	55.06
Os02t0623400-00	Rice	nucleus	59.9	55.02
CDY14848	Canola	nucleus	50.52	54.8
GSMUA_Achr1P09270_001	Banana	nucleus	48.96	54.65
GSMUA_AchrUn_...	Banana	nucleus	43.75	54.55
GSMUA_Achr4P21940_001	Banana	nucleus	49.48	54.29
Zm00001d014032_P001	Maize	nucleus	59.38	54.29
CDY32977	Canola	nucleus, plastid	51.04	53.55
CDY61050	Canola	nucleus	51.04	53.55
Zm00001d032696_P001	Maize	nucleus	59.38	53.52
CDY06675	Canola	nucleus, plastid	54.69	53.03
CDY10247	Canola	nucleus, plastid	54.69	53.03
CDY59064	Canola	nucleus	54.17	52.53
GSMUA_Achr4P28760_001	Banana	nucleus	50.0	52.46
CDX77619	Canola	cytosol	26.56	52.04
CDX94980	Canola	nucleus	53.65	52.02
CDY09940	Canola	nucleus	53.65	52.02
CDY20312	Canola	nucleus	53.65	52.02
CDY52287	Canola	nucleus	53.65	52.02
CDX88480	Canola	nucleus	49.48	51.35
KXG38327	Sorghum	nucleus	59.38	51.12
GSMUA_Achr6P36540_001	Banana	nucleus	42.71	50.93
HORVU1Hr1G041240.5	Barley	nucleus	59.9	50.66
CDX87432	Canola	nucleus	49.48	50.0
CDY06030	Canola	nucleus	46.88	49.72
CDY14588	Canola	nucleus	48.44	48.95
CDX87760	Canola	nucleus	45.83	48.89
CDY26881	Canola	nucleus	48.44	48.69
CDY01557	Canola	nucleus	47.92	48.17
CDY32978	Canola	cytosol, nucleus, plastid	46.88	48.13
CDX76510	Canola	nucleus	47.92	47.67
CDY67351	Canola	nucleus	47.92	47.67
Zm00001d051966_P001	Maize	nucleus	60.94	47.56
TraesCS1A01G154900.1	Wheat	nucleus	59.38	47.3
CDY34056	Canola	nucleus	47.4	47.15
Zm00001d018433_P001	Maize	nucleus	60.42	46.96
CDX78877	Canola	nucleus	47.92	46.94
EES05986	Sorghum	nucleus	60.94	46.61
Os02t0811000-01	Rice	nucleus	59.9	46.37
TraesCS6A01G377300.1	Wheat	nucleus	60.42	46.03
TraesCS6B01G414700.1	Wheat	nucleus	60.42	46.03
TraesCS6D01G361900.1	Wheat	nucleus	60.42	46.03
HORVU6Hr1G088790.1	Barley	nucleus	59.38	44.53

Protein Annotations

EnsemblPlants:CDY64755	EnsemblPlantsGene:GSBRNA2T00042679001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165	PANTHER:PTHR31165:SF16
PFAM:PF04852	PFscan:PS51697	ProteinID:CDY64755	ProteinID:CDY64755.1	SEG:seg	UniParc:UPI0004EEF263
UniProt:A0A078JE96	MapMan:35.1	:	:	:	:

Description

BnaCnng44770DBnaCnng44770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE96]

Coordinates

chrLK034542:+:19280..19858

Molecular Weight (calculated)

21767.7 Da

IEP (calculated)

10.526

GRAVY (calculated)

-0.893

Length

192 amino acids

Sequence
(BLAST)

001: MELISHQANR NPNTSTQSTP PASSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLSNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LYLREVRDFQ AKARGVSYDK KRKRVNRQKT QTLPQTQPPL PLQQQQPHQG QSVMANYSGA TV

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.