Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06030 | Canola | nucleus | 78.57 | 42.54 |
| CDX87760 | Canola | nucleus | 77.55 | 42.22 |
| Bra021995.1-P | Field mustard | nucleus | 77.55 | 41.99 |
| CDY34056 | Canola | nucleus | 70.41 | 35.75 |
| CDY67351 | Canola | nucleus | 70.41 | 35.75 |
| CDX76510 | Canola | nucleus | 70.41 | 35.75 |
| CDX78877 | Canola | nucleus | 70.41 | 35.2 |
| CDY01557 | Canola | nucleus | 68.37 | 35.08 |
| KRH42865 | Soybean | plastid | 58.16 | 34.13 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 60.2 | 33.71 |
| KRH11015 | Soybean | nucleus | 60.2 | 32.6 |
| KRH21273 | Soybean | nucleus | 59.18 | 32.04 |
| PGSC0003DMT400026433 | Potato | nucleus | 60.2 | 30.89 |
| Solyc02g076820.2.1 | Tomato | plastid | 60.2 | 30.73 |
| CDY55387 | Canola | nucleus | 55.1 | 30.34 |
| CDY47983 | Canola | nucleus | 54.08 | 30.11 |
| CDY14848 | Canola | nucleus | 54.08 | 29.94 |
| CDY02038 | Canola | cytosol | 50.0 | 29.88 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 50.0 | 29.7 |
| CDY63294 | Canola | nucleus | 53.06 | 28.26 |
| CDY49331 | Canola | nucleus, plastid | 55.1 | 27.55 |
| CDY42932 | Canola | nucleus, plastid | 55.1 | 27.41 |
| CDY52479 | Canola | nucleus, plastid | 53.06 | 27.37 |
| CDX74186 | Canola | nucleus, plastid | 53.06 | 27.37 |
| CDY05593 | Canola | nucleus, plastid | 53.06 | 27.23 |
| CDY32697 | Canola | nucleus | 48.98 | 27.12 |
| CDY57024 | Canola | nucleus, plastid | 53.06 | 27.08 |
| CDX88480 | Canola | nucleus | 51.02 | 27.03 |
| CDY21126 | Canola | nucleus, plastid | 52.04 | 26.84 |
| CDY30000 | Canola | nucleus, plastid | 52.04 | 26.84 |
| CDY52505 | Canola | nucleus, plastid | 52.04 | 26.7 |
| CDX86199 | Canola | plastid | 52.04 | 26.56 |
| CDY64755 | Canola | nucleus, plastid | 52.04 | 26.56 |
| CDY59510 | Canola | nucleus | 48.98 | 26.52 |
| CDX87432 | Canola | nucleus | 51.02 | 26.32 |
| CDY32977 | Canola | nucleus, plastid | 48.98 | 26.23 |
| CDY61050 | Canola | nucleus | 48.98 | 26.23 |
| CDY69731 | Canola | plastid | 52.04 | 26.15 |
| CDY10247 | Canola | nucleus, plastid | 52.04 | 25.76 |
| CDY06675 | Canola | nucleus, plastid | 52.04 | 25.76 |
| CDY35523 | Canola | plastid | 51.02 | 25.64 |
| CDX85083 | Canola | plastid | 52.04 | 25.63 |
| CDX77531 | Canola | plastid | 52.04 | 25.63 |
| CDY14588 | Canola | nucleus | 48.98 | 25.26 |
| CDY26881 | Canola | nucleus | 48.98 | 25.13 |
| CDY59064 | Canola | nucleus | 50.0 | 24.75 |
| CDY09940 | Canola | nucleus | 50.0 | 24.75 |
| CDY52287 | Canola | nucleus | 50.0 | 24.75 |
| CDX94980 | Canola | nucleus | 50.0 | 24.75 |
| CDY20312 | Canola | nucleus | 50.0 | 24.75 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 46.94 | 24.6 |
| CDY10790 | Canola | nucleus | 47.96 | 21.86 |
| CDY24755 | Canola | nucleus, plastid | 47.96 | 21.86 |
| CDY57088 | Canola | nucleus | 47.96 | 21.66 |
| CDY57087 | Canola | nucleus | 47.96 | 21.66 |
| CDY15426 | Canola | nucleus | 47.96 | 21.66 |
Protein Annotations
| EnsemblPlants:CDX77619 | EnsemblPlantsGene:GSBRNA2T00128545001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX77619 | ProteinID:CDX77619.1 | UniParc:UPI0004EC5C66 | MapMan:35.1 |
Description
BnaC07g18730D
Coordinates
chrLK031812:-:159259..159555
Molecular Weight (calculated)
11476.4 Da
IEP (calculated)
8.111
GRAVY (calculated)
-1.006
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MRIFQFNHTH VLSFLDYLNQ FRKNKVHHQA CAFFGQPDPP SPCTCPLKQA WESLDTLFRR RRATYEEHGG GSSDSNPFGN GSIRIHLREE KEKEENQN
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Arabidopsis Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.