Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 96.26 | 96.26 |
| CDY32697 | Canola | nucleus | 60.96 | 64.41 |
| CDY59510 | Canola | nucleus | 60.96 | 62.98 |
| CDY32977 | Canola | nucleus, plastid | 60.96 | 62.3 |
| CDY61050 | Canola | nucleus | 60.43 | 61.75 |
| AT5G58500.1 | Thale cress | nucleus | 59.89 | 61.54 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 47.59 | 53.94 |
| CDY02038 | Canola | cytosol | 45.45 | 51.83 |
| KRH72732 | Soybean | nucleus | 59.89 | 51.14 |
| CDY63294 | Canola | nucleus | 50.27 | 51.09 |
| CDY59064 | Canola | nucleus | 53.48 | 50.51 |
| CDY10247 | Canola | nucleus, plastid | 53.48 | 50.51 |
| CDY06675 | Canola | nucleus, plastid | 53.48 | 50.51 |
| CDY47983 | Canola | nucleus | 47.06 | 50.0 |
| CDY20312 | Canola | nucleus | 52.94 | 50.0 |
| CDY52287 | Canola | nucleus | 52.94 | 50.0 |
| CDY09940 | Canola | nucleus | 52.94 | 50.0 |
| CDY55387 | Canola | nucleus | 47.59 | 50.0 |
| CDX94980 | Canola | nucleus | 52.94 | 50.0 |
| KRH17088 | Soybean | nucleus | 58.29 | 50.0 |
| CDY14848 | Canola | nucleus | 47.06 | 49.72 |
| CDX74186 | Canola | nucleus, plastid | 50.27 | 49.47 |
| OQU83235 | Sorghum | cytosol | 46.52 | 49.43 |
| CDX86199 | Canola | plastid | 50.27 | 48.96 |
| CDY52479 | Canola | nucleus, plastid | 49.73 | 48.95 |
| CDY57024 | Canola | nucleus, plastid | 49.73 | 48.44 |
| CDY35523 | Canola | plastid | 50.27 | 48.21 |
| CDY69731 | Canola | plastid | 50.27 | 48.21 |
| CDY49331 | Canola | nucleus, plastid | 50.27 | 47.96 |
| CDY42932 | Canola | nucleus, plastid | 50.27 | 47.72 |
| CDX77531 | Canola | plastid | 50.27 | 47.24 |
| CDX85083 | Canola | plastid | 50.27 | 47.24 |
| CDY05593 | Canola | nucleus, plastid | 48.13 | 47.12 |
| CDY52505 | Canola | nucleus, plastid | 48.13 | 47.12 |
| PGSC0003DMT400078091 | Potato | nucleus | 56.15 | 47.09 |
| CDX77619 | Canola | cytosol | 24.6 | 46.94 |
| CDY64755 | Canola | nucleus, plastid | 48.13 | 46.88 |
| Solyc06g082210.1.1 | Tomato | nucleus | 55.62 | 46.85 |
| CDY30000 | Canola | nucleus, plastid | 47.59 | 46.84 |
| CDY21126 | Canola | nucleus, plastid | 47.59 | 46.84 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 57.22 | 46.32 |
| CDX87760 | Canola | nucleus | 44.38 | 46.11 |
| CDY06030 | Canola | nucleus | 44.38 | 45.86 |
| CDY10790 | Canola | nucleus | 52.41 | 45.58 |
| KRH30185 | Soybean | nucleus | 57.22 | 45.53 |
| CDY15426 | Canola | nucleus | 52.41 | 45.16 |
| CDY24755 | Canola | nucleus, plastid | 51.87 | 45.12 |
| CDY57087 | Canola | nucleus | 51.87 | 44.7 |
| CDY57088 | Canola | nucleus | 51.87 | 44.7 |
| KRG98226 | Soybean | nucleus | 55.08 | 44.4 |
| CDY01557 | Canola | nucleus | 44.92 | 43.98 |
| CDX88480 | Canola | nucleus | 43.32 | 43.78 |
| CDY67351 | Canola | nucleus | 44.92 | 43.52 |
| CDY34056 | Canola | nucleus | 44.92 | 43.52 |
| CDX76510 | Canola | nucleus | 44.92 | 43.52 |
| CDX78877 | Canola | nucleus | 44.92 | 42.86 |
| CDY14588 | Canola | nucleus | 42.78 | 42.11 |
| CDX87432 | Canola | nucleus | 42.78 | 42.11 |
| CDY26881 | Canola | nucleus | 42.78 | 41.88 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 42.78 | 38.84 |
| Os05t0347400-01 | Rice | nucleus | 57.22 | 37.68 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 55.62 | 36.75 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 55.62 | 36.62 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 55.62 | 36.62 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 38.5 | 36.55 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 55.08 | 36.01 |
| Zm00001d038016_P001 | Maize | extracellular | 54.55 | 33.89 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 52.94 | 31.33 |
| EES19345 | Sorghum | nucleus, plastid | 53.48 | 30.77 |
Protein Annotations
| EnsemblPlants:CDY32978 | EnsemblPlantsGene:GSBRNA2T00053195001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY32978 | ProteinID:CDY32978.1 | SEG:seg | UniParc:UPI0004EDD9E0 |
| UniProt:A0A078H7V1 | MapMan:35.1 | : | : | : | : |
Description
BnaA10g11840DBnaA10g11840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7V1]
Coordinates
chrLK032304:+:33102..33665
Molecular Weight (calculated)
20078.0 Da
IEP (calculated)
10.180
GRAVY (calculated)
-0.382
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGETAAAAK KAVATVASST ASPSRYEAQK RRDWDTFVKY LKNREPTICQ CRCSGAHVIE FLKYLDQFGK TKVHVAACPF FGEPNPPSQC PCPLRQAWGS
101: LDSLVGRQRA AFEDIGGGAP ESNPFAAKVV SIYLKEVREA QARARGIPHG KKKWKRPRVA KATLNADDGG GGRGSGVAAL VVSATMV
101: LDSLVGRQRA AFEDIGGGAP ESNPFAAKVV SIYLKEVREA QARARGIPHG KKKWKRPRVA KATLNADDGG GGRGSGVAAL VVSATMV
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Arabidopsis Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.