Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040188.1-P | Field mustard | nucleus, plastid | 98.98 | 98.48 |
| CDY42932 | Canola | nucleus, plastid | 98.98 | 98.48 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 92.35 | 90.05 |
| CDX74186 | Canola | nucleus, plastid | 83.67 | 86.32 |
| CDY21126 | Canola | nucleus, plastid | 83.16 | 85.79 |
| CDY30000 | Canola | nucleus, plastid | 82.14 | 84.74 |
| CDY63294 | Canola | nucleus | 78.06 | 83.15 |
| CDY05593 | Canola | nucleus, plastid | 79.08 | 81.15 |
| CDY52505 | Canola | nucleus, plastid | 78.57 | 80.63 |
| CDY64755 | Canola | nucleus, plastid | 78.06 | 79.69 |
| CDY52479 | Canola | nucleus, plastid | 77.04 | 79.47 |
| CDY57024 | Canola | nucleus, plastid | 77.55 | 79.17 |
| CDX86199 | Canola | plastid | 76.53 | 78.12 |
| GSMUA_Achr11P... | Banana | nucleus | 32.65 | 68.09 |
| KRH34151 | Soybean | plastid | 60.71 | 67.61 |
| Zm00001d025863_P001 | Maize | nucleus | 54.59 | 63.69 |
| KRG92633 | Soybean | nucleus | 61.22 | 63.16 |
| KRG97044 | Soybean | plastid | 58.67 | 62.84 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 61.22 | 62.83 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 65.82 | 61.72 |
| KRH68792 | Soybean | plastid | 57.65 | 61.41 |
| Solyc05g055020.2.1 | Tomato | nucleus | 65.82 | 61.14 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 56.12 | 61.11 |
| CDY69731 | Canola | plastid | 60.2 | 60.51 |
| CDY35523 | Canola | plastid | 59.69 | 60.0 |
| CDX77531 | Canola | plastid | 60.71 | 59.8 |
| CDX85083 | Canola | plastid | 60.71 | 59.8 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 50.0 | 59.39 |
| PGSC0003DMT400029945 | Potato | nucleus | 55.1 | 59.02 |
| CDY02038 | Canola | cytosol | 48.47 | 57.93 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.0 | 56.98 |
| EES11114 | Sorghum | nucleus | 56.63 | 55.78 |
| Zm00001d003057_P001 | Maize | nucleus | 56.63 | 55.5 |
| CDY32697 | Canola | nucleus | 50.0 | 55.37 |
| CDY10790 | Canola | nucleus | 60.71 | 55.35 |
| CDX77619 | Canola | cytosol | 27.55 | 55.1 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 56.12 | 55.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 56.63 | 54.95 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 56.63 | 54.95 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.47 | 54.91 |
| CDY57087 | Canola | nucleus | 60.71 | 54.84 |
| CDY57088 | Canola | nucleus | 60.71 | 54.84 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 55.61 | 54.77 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 56.12 | 54.73 |
| CDY24755 | Canola | nucleus, plastid | 59.69 | 54.42 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 56.63 | 54.41 |
| CDY15426 | Canola | nucleus | 60.2 | 54.38 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.96 | 54.34 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 55.61 | 54.23 |
| CDY59510 | Canola | nucleus | 50.0 | 54.14 |
| Os04t0516200-01 | Rice | nucleus | 55.61 | 53.96 |
| Zm00001d051143_P001 | Maize | nucleus | 55.61 | 53.96 |
| CDY55387 | Canola | nucleus | 48.98 | 53.93 |
| Os10t0478000-01 | Rice | nucleus | 56.12 | 53.92 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 55.1 | 53.73 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 47.96 | 53.71 |
| Zm00001d017263_P001 | Maize | nucleus | 55.61 | 53.43 |
| CDY47983 | Canola | nucleus | 47.96 | 53.41 |
| KXG30661 | Sorghum | nucleus | 56.63 | 53.37 |
| CDY14848 | Canola | nucleus | 47.96 | 53.11 |
| CDY06675 | Canola | nucleus, plastid | 53.06 | 52.53 |
| CDY10247 | Canola | nucleus, plastid | 53.06 | 52.53 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 55.1 | 52.43 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 55.1 | 52.43 |
| Zm00001d014032_P001 | Maize | nucleus | 56.12 | 52.38 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 45.92 | 52.33 |
| Os02t0623400-00 | Rice | nucleus | 55.1 | 51.67 |
| Zm00001d032696_P001 | Maize | nucleus | 56.12 | 51.64 |
| CDY32977 | Canola | nucleus, plastid | 47.96 | 51.37 |
| CDY61050 | Canola | nucleus | 47.96 | 51.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.31 | 51.3 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 42.86 | 51.22 |
| CDY59064 | Canola | nucleus | 51.53 | 51.01 |
| CDX94980 | Canola | nucleus | 51.02 | 50.51 |
| CDY09940 | Canola | nucleus | 51.02 | 50.51 |
| CDY20312 | Canola | nucleus | 51.02 | 50.51 |
| CDY52287 | Canola | nucleus | 51.02 | 50.51 |
| CDY06030 | Canola | nucleus | 46.43 | 50.28 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 46.94 | 50.27 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 47.96 | 50.27 |
| CDY01557 | Canola | nucleus | 48.98 | 50.26 |
| CDX76510 | Canola | nucleus | 49.49 | 50.26 |
| CDY67351 | Canola | nucleus | 49.49 | 50.26 |
| CDX87760 | Canola | nucleus | 45.92 | 50.0 |
| CDY34056 | Canola | nucleus | 48.98 | 49.74 |
| CDX88480 | Canola | nucleus | 46.94 | 49.73 |
| CDX78877 | Canola | nucleus | 49.49 | 49.49 |
| KXG38327 | Sorghum | nucleus | 56.12 | 49.33 |
| CDX87432 | Canola | nucleus | 46.94 | 48.42 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 55.61 | 48.02 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 39.29 | 47.83 |
| CDY14588 | Canola | nucleus | 45.92 | 47.37 |
| CDY26881 | Canola | nucleus | 45.92 | 47.12 |
| Zm00001d051966_P001 | Maize | nucleus | 57.14 | 45.53 |
| Zm00001d018433_P001 | Maize | nucleus | 56.63 | 44.94 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 55.1 | 44.81 |
| EES05986 | Sorghum | nucleus | 57.14 | 44.62 |
| Os02t0811000-01 | Rice | nucleus | 56.12 | 44.35 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 56.63 | 44.05 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 56.63 | 44.05 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 56.63 | 44.05 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 55.61 | 42.58 |
Protein Annotations
| EnsemblPlants:CDY49331 | EnsemblPlantsGene:GSBRNA2T00092868001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY49331 | ProteinID:CDY49331.1 | SEG:seg | UniParc:UPI0004EE44F3 |
| UniProt:A0A078IH62 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g32930DBnaA05g32930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH62]
Coordinates
chrLK032826:+:20028..21090
Molecular Weight (calculated)
22171.0 Da
IEP (calculated)
10.214
GRAVY (calculated)
-0.995
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPISQNHNN NPNTTLSTQH ASSPPPSSRY ENQKRRDWNT FCQYLRNHRP PLSPPSCSGA HVLEFLRYLD QFGKTKVHHQ NCAFFGLPNP PAPCPCPLRQ
101: AWGSLDALIG RLRAAYEENG GAPDTSPFGS RSVRIFLREV RDFQAKSRGV SYEKKRKRVN NKQITQSPSQ PPLPPQPLEQ QQQGQSMMAN YHHGAT
101: AWGSLDALIG RLRAAYEENG GAPDTSPFGS RSVRIFLREV RDFQAKSRGV SYEKKRKRVN NKQITQSPSQ PPLPPQPLEQ QQQGQSMMAN YHHGAT
001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
Arabidopsis Description
LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.