Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | PGSC0003DMT400063187 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 90.71 | 92.22 |
| GSMUA_Achr11P... | Banana | nucleus | 33.88 | 65.96 |
| KRH34151 | Soybean | plastid | 58.47 | 60.8 |
| Zm00001d025863_P001 | Maize | nucleus | 54.64 | 59.52 |
| KRG97044 | Soybean | plastid | 58.47 | 58.47 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 60.66 | 58.12 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 60.11 | 57.89 |
| CDY52505 | Canola | nucleus, plastid | 60.11 | 57.59 |
| CDY05593 | Canola | nucleus, plastid | 60.11 | 57.59 |
| KRG92633 | Soybean | nucleus | 59.56 | 57.37 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 59.56 | 57.07 |
| KRH68792 | Soybean | plastid | 57.38 | 57.07 |
| CDY21126 | Canola | nucleus, plastid | 59.02 | 56.84 |
| CDY64755 | Canola | nucleus, plastid | 59.56 | 56.77 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 64.48 | 56.46 |
| CDY52479 | Canola | nucleus, plastid | 58.47 | 56.32 |
| CDY30000 | Canola | nucleus, plastid | 58.47 | 56.32 |
| CDY57024 | Canola | nucleus, plastid | 59.02 | 56.25 |
| PGSC0003DMT400026698 | Potato | nucleus | 56.83 | 56.22 |
| CDY63294 | Canola | nucleus | 56.28 | 55.98 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 58.47 | 55.73 |
| CDX74186 | Canola | nucleus, plastid | 57.38 | 55.26 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 57.38 | 55.26 |
| CDX86199 | Canola | plastid | 57.92 | 55.21 |
| CDY49331 | Canola | nucleus, plastid | 59.02 | 55.1 |
| PGSC0003DMT400054474 | Potato | plastid | 52.46 | 54.86 |
| CDY42932 | Canola | nucleus, plastid | 59.02 | 54.82 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 60.11 | 54.73 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 58.47 | 54.31 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 60.11 | 54.19 |
| Bra009997.1-P | Field mustard | plastid | 56.83 | 54.17 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 57.92 | 53.27 |
| EES11114 | Sorghum | nucleus | 57.92 | 53.27 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 58.47 | 53.23 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 58.47 | 53.23 |
| PGSC0003DMT400052658 | Potato | nucleus | 50.27 | 53.18 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 50.27 | 53.18 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 57.92 | 53.0 |
| Zm00001d003057_P001 | Maize | nucleus | 57.92 | 53.0 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 57.92 | 52.74 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 49.73 | 52.6 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 57.92 | 52.48 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 57.92 | 52.48 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 57.92 | 51.96 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 48.63 | 51.74 |
| Os04t0516200-01 | Rice | nucleus | 56.83 | 51.49 |
| Zm00001d051143_P001 | Maize | nucleus | 56.83 | 51.49 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 57.92 | 51.46 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 57.92 | 51.46 |
| PGSC0003DMT400026433 | Potato | nucleus | 53.55 | 51.31 |
| PGSC0003DMT400027334 | Potato | nucleus | 49.18 | 50.56 |
| Os10t0478000-01 | Rice | nucleus | 56.28 | 50.49 |
| Zm00001d017263_P001 | Maize | nucleus | 56.28 | 50.49 |
| KXG30661 | Sorghum | nucleus | 57.38 | 50.48 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 48.09 | 50.29 |
| Zm00001d014032_P001 | Maize | nucleus | 57.38 | 50.0 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 49.73 | 49.73 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 46.45 | 49.42 |
| Zm00001d032696_P001 | Maize | nucleus | 57.38 | 49.3 |
| Os02t0623400-00 | Rice | nucleus | 56.28 | 49.28 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 43.72 | 48.78 |
| PGSC0003DMT400051692 | Potato | nucleus | 55.19 | 48.56 |
| PGSC0003DMT400018295 | Potato | nucleus | 50.27 | 48.17 |
| KXG38327 | Sorghum | nucleus | 57.92 | 47.53 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 58.47 | 47.14 |
| PGSC0003DMT400039811 | Potato | nucleus | 52.46 | 46.83 |
| PGSC0003DMT400054899 | Potato | nucleus | 52.46 | 46.38 |
| PGSC0003DMT400078091 | Potato | nucleus | 55.19 | 45.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.7 | 44.81 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 38.8 | 44.1 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 57.92 | 43.98 |
| Zm00001d051966_P001 | Maize | nucleus | 59.02 | 43.9 |
| Zm00001d018433_P001 | Maize | nucleus | 59.02 | 43.72 |
| EES05986 | Sorghum | nucleus | 59.56 | 43.43 |
| Os02t0811000-01 | Rice | nucleus | 57.92 | 42.74 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 57.92 | 42.06 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 57.92 | 42.06 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 57.92 | 42.06 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 57.92 | 41.41 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 59.02 | 36.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029945 | EnsemblPlantsGene:PGSC0003DMG400011497 | EntrezGene:102587546 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF36 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG400011497 | RefSeq:XP_006361418.1 | SEG:seg |
| UniParc:UPI000294AC96 | UniProt:M1ATJ9 | MapMan:35.1 | : | : | : |
Description
Light-dependent short hypocotyls 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011497]
Coordinates
chr4:+:6230160..6232158
Molecular Weight (calculated)
21043.4 Da
IEP (calculated)
10.156
GRAVY (calculated)
-0.568
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVANVTPSN NVVDILSAPR LSRYESQKRR DWNTFCQYIR NHHPLMSLLQ CSSIHVLEFL RYLDQFGKTK VHNLNCPFFG MLNPPAPCAC PLRQAWGSLD
101: ALIGRLRAAY EEHGGNSEMN PFGAKAVKLF LRDVRNFQSK SRGISYDKKR KKSRRNQKNI MAMKEVDHQI HDDKNVGANI VIE
101: ALIGRLRAAY EEHGGNSEMN PFGAKAVKLF LRDVRNFQSK SRGISYDKKR KKSRRNQKNI MAMKEVDHQI HDDKNVGANI VIE
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Arabidopsis Description
LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.