Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g014260.1.1 | Tomato | nucleus | 95.61 | 95.61 |
| PGSC0003DMT400052658 | Potato | nucleus | 63.41 | 75.14 |
| PGSC0003DMT400018295 | Potato | nucleus | 68.29 | 73.3 |
| PGSC0003DMT400054899 | Potato | nucleus | 71.22 | 70.53 |
| PGSC0003DMT400027334 | Potato | nucleus | 59.51 | 68.54 |
| PGSC0003DMT400026433 | Potato | nucleus | 62.93 | 67.54 |
| CDX88480 | Canola | nucleus | 58.05 | 64.32 |
| AT1G16910.1 | Thale cress | cytosol | 50.24 | 62.8 |
| Bra035066.1-P | Field mustard | nucleus | 58.05 | 62.63 |
| CDX87432 | Canola | nucleus | 58.05 | 62.63 |
| CDY14588 | Canola | nucleus | 56.59 | 61.05 |
| CDY26881 | Canola | nucleus | 56.59 | 60.73 |
| AT1G78815.1 | Thale cress | nucleus | 57.56 | 60.51 |
| Bra008382.1-P | Field mustard | nucleus | 56.1 | 60.21 |
| PGSC0003DMT400026698 | Potato | nucleus | 51.71 | 57.3 |
| PGSC0003DMT400054474 | Potato | plastid | 48.78 | 57.14 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 53.17 | 53.69 |
| PGSC0003DMT400029945 | Potato | nucleus | 46.83 | 52.46 |
| PGSC0003DMT400051692 | Potato | nucleus | 51.71 | 50.96 |
| Bra003637.1-P | Field mustard | nucleus | 39.51 | 50.62 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 49.27 | 48.33 |
| PGSC0003DMT400078091 | Potato | nucleus | 48.78 | 44.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039811 | EnsemblPlantsGene:PGSC0003DMG400015386 | EntrezGene:102602985 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF37 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG400015386 | RefSeq:XP_006358940.1 | SEG:seg |
| UniParc:UPI000294FE90 | UniProt:M1B8U2 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015386]
Coordinates
chr12:+:232124..233129
Molecular Weight (calculated)
23045.3 Da
IEP (calculated)
9.901
GRAVY (calculated)
-0.816
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSNDQIIIE GGGGGEGEGS LSRSSTTILI APSDDHHHQL PSVPVPPQLS RYESQKRRDW NTFGQYLKNQ RPPVPLSQCN YNHVLEFLRY LDQFGKTKVH
101: LHGCPFFGQP EPPGPCTCPL RQAWGSLDAL IGRLRAAYEE NGGLPENNPF ASGSIRVYLR EVRDFQAKAR GISYKKKKKK RKMQNKPTSS NAHETTTTTF
201: QFQSS
101: LHGCPFFGQP EPPGPCTCPL RQAWGSLDAL IGRLRAAYEE NGGLPENNPF ASGSIRVYLR EVRDFQAKAR GISYKKKKKK RKMQNKPTSS NAHETTTTTF
201: QFQSS
001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
Arabidopsis Description
LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.