Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062470.2.1 | Tomato | nucleus | 69.11 | 89.8 |
| PGSC0003DMT400054899 | Potato | nucleus | 74.87 | 69.08 |
| KRH27347 | Soybean | nucleus | 66.49 | 69.02 |
| PGSC0003DMT400039811 | Potato | nucleus | 73.3 | 68.29 |
| PGSC0003DMT400052658 | Potato | nucleus | 60.73 | 67.05 |
| KRH21973 | Soybean | nucleus | 65.97 | 64.95 |
| PGSC0003DMT400027334 | Potato | nucleus | 60.21 | 64.61 |
| PGSC0003DMT400026433 | Potato | nucleus | 61.26 | 61.26 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 68.59 | 59.55 |
| PGSC0003DMT400054474 | Potato | plastid | 50.26 | 54.86 |
| PGSC0003DMT400026698 | Potato | nucleus | 50.79 | 52.43 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 53.93 | 50.74 |
| PGSC0003DMT400029945 | Potato | nucleus | 48.17 | 50.27 |
| PGSC0003DMT400051692 | Potato | nucleus | 51.83 | 47.6 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 51.31 | 46.89 |
| PGSC0003DMT400078091 | Potato | nucleus | 52.36 | 44.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018295 | EnsemblPlantsGene:PGSC0003DMG401007101 | EntrezGene:102581082 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF37 | PFAM:PF04852 | PFscan:PS51697 | PGSC:PGSC0003DMG401007101 | RefSeq:XP_006348309.1 | SEG:seg |
| UniParc:UPI0002957B2E | UniProt:M1AAD8 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401007101]
Coordinates
chr7:-:52566934..52567772
Molecular Weight (calculated)
21610.4 Da
IEP (calculated)
9.940
GRAVY (calculated)
-0.933
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSSEQRRE AGGEGEGSSS TTAITLAQSD DHHHHHQLSP PPQLSRYESQ KRRDWNTFGQ YLKNHKPPVP LPQCNYNHVL DFLRYLDQFG KTKVHLNGCV
101: FFGQVEQVGP CTCPLKQAWG SLDALIGRLR AAYEENGGLQ ETNPFANSAI RIHLREVRDS QAKARGIPYK KKKKKRKIQI NSSNNNEVNS S
101: FFGQVEQVGP CTCPLKQAWG SLDALIGRLR AAYEENGGLQ ETNPFANSAI RIHLREVRDS QAKARGIPYK KKKKKRKIQI NSSNNNEVNS S
001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
Arabidopsis Description
LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.