Factsheet for PGSC0003DMT400044213

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090180.1.1	Tomato	plastid	97.54	95.19
GSMUA_Achr11P...	Banana	nucleus	37.44	80.85
Bra023738.1-P	Field mustard	plastid	67.98	78.41
CDY35523	Canola	plastid	70.94	73.85
CDY69731	Canola	plastid	70.44	73.33
AT3G23290.2	Thale cress	plastid	69.95	72.82
Zm00001d025863_P001	Maize	nucleus	59.11	71.43
Bra014935.1-P	Field mustard	plastid	69.95	71.36
CDX77531	Canola	plastid	69.95	71.36
CDX85083	Canola	plastid	69.95	71.36
PGSC0003DMT400026698	Potato	nucleus	65.02	71.35
PGSC0003DMT400051692	Potato	nucleus	66.01	64.42
GSMUA_Achr5P03870_001	Banana	nucleus	54.68	64.16
PGSC0003DMT400054474	Potato	plastid	55.17	64.0
GSMUA_Achr5P18640_001	Banana	nucleus	54.19	63.95
Os04t0516200-01	Rice	nucleus	63.05	63.37
EES11114	Sorghum	nucleus	62.07	63.32
Zm00001d003057_P001	Maize	nucleus	62.07	63.0
HORVU2Hr1G089190.1	Barley	nucleus	61.58	62.81
TraesCS2D01G378900.1	Wheat	nucleus	62.07	62.69
TraesCS6B01G256500.1	Wheat	nucleus	61.58	62.5
Zm00001d017263_P001	Maize	nucleus	62.56	62.25
TraesCS2A01G382500.1	Wheat	nucleus	61.58	62.19
TraesCS2B01G399800.1	Wheat	nucleus	61.58	62.19
Zm00001d051143_P001	Maize	nucleus	61.58	61.88
TraesCS6A01G225000.1	Wheat	nucleus	61.58	61.88
TraesCS6D01G209700.1	Wheat	nucleus	61.58	61.88
GSMUA_Achr5P14570_001	Banana	nucleus	52.71	61.85
PGSC0003DMT400052658	Potato	nucleus	52.71	61.85
Os10t0478000-01	Rice	nucleus	61.58	61.27
HORVU6Hr1G058340.2	Barley	nucleus	61.58	61.27
KXG30661	Sorghum	nucleus	62.56	61.06
Os02t0623400-00	Rice	nucleus	62.56	60.77
Zm00001d014032_P001	Maize	nucleus	62.56	60.48
TraesCS1D01G153700.1	Wheat	nucleus	61.08	60.19
TraesCS1B01G172100.1	Wheat	nucleus	61.08	60.19
PGSC0003DMT400029945	Potato	nucleus	54.19	60.11
Zm00001d032696_P001	Maize	nucleus	62.56	59.62
GSMUA_Achr4P21940_001	Banana	nucleus	51.23	59.43
GSMUA_Achr1P09270_001	Banana	nucleus	50.25	59.3
PGSC0003DMT400026433	Potato	nucleus	54.68	58.12
GSMUA_AchrUn_...	Banana	nucleus	43.35	57.14
KXG38327	Sorghum	nucleus	62.56	56.95
GSMUA_Achr4P28760_001	Banana	nucleus	51.23	56.83
GSMUA_Achr6P36540_001	Banana	nucleus	44.83	56.52
GSMUA_Achr1P05650_001	Banana	nucleus	45.32	56.1
PGSC0003DMT400060169	Potato	nucleus, plastid	57.64	55.98
HORVU1Hr1G041240.5	Barley	nucleus	61.58	55.07
PGSC0003DMT400027334	Potato	nucleus	48.28	55.06
Zm00001d051966_P001	Maize	nucleus	65.52	54.06
PGSC0003DMT400018295	Potato	nucleus	50.74	53.93
Zm00001d018433_P001	Maize	nucleus	65.02	53.44
PGSC0003DMT400078091	Potato	nucleus	58.62	53.36
PGSC0003DMT400039811	Potato	nucleus	53.69	53.17
EES05986	Sorghum	nucleus	65.52	52.99
TraesCS6A01G377300.1	Wheat	nucleus	65.52	52.78
TraesCS6B01G414700.1	Wheat	nucleus	65.52	52.78
TraesCS6D01G361900.1	Wheat	nucleus	65.52	52.78
Os02t0811000-01	Rice	nucleus	64.04	52.42
PGSC0003DMT400054899	Potato	nucleus	53.2	52.17
TraesCS1A01G154900.1	Wheat	nucleus	61.08	51.45
HORVU6Hr1G088790.1	Barley	nucleus	64.53	51.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400044213	EnsemblPlantsGene:PGSC0003DMG400017168	EntrezGene:102586971	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008150	GO:GO:0009653	GO:GO:0090698	InterPro:ALOG_dom	InterPro:IPR006936
PANTHER:PTHR31165	PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	PGSC:PGSC0003DMG400017168	RefSeq:XP_006354481.1
SEG:seg	UniParc:UPI000294FFFE	UniProt:M1BFT5	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017168]

Coordinates

chr9:-:56487246..56488313

Molecular Weight (calculated)

22917.8 Da

IEP (calculated)

10.334

GRAVY (calculated)

-1.030

Length

203 amino acids

Sequence
(BLAST)

001: MEHNQEVDSP NSVIIHHHHH NHNHNNNSMT MLAGNNNNNY PASSSSNSPT TLSRYENQKR RDWNTFGQYL RNHRPPLSLT RCSGAHVLEF LRYLDQFGKT
101: KVHTQLCPFF GHPNPPAPCP CPLRQAWGSL DALIGRLRAA YEENGGKPET NPFGARAVRL YLREVRDSQA KARGISYEKK KRKKTNPQLS SSSSLPPPNG
201: NSS

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.