Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 6
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023738.1-P | Field mustard | plastid | 84.1 | 93.18 |
| CDY35523 | Canola | plastid | 92.82 | 92.82 |
| CDY69731 | Canola | plastid | 91.28 | 91.28 |
| GSMUA_Achr11P... | Banana | nucleus | 37.44 | 77.66 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 72.82 | 69.95 |
| Zm00001d025863_P001 | Maize | nucleus | 60.0 | 69.64 |
| Solyc09g090180.1.1 | Tomato | plastid | 72.31 | 67.79 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 63.08 | 64.74 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 65.64 | 64.0 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 65.64 | 63.37 |
| Os04t0516200-01 | Rice | nucleus | 65.64 | 63.37 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 65.64 | 63.37 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 64.62 | 63.32 |
| EES11114 | Sorghum | nucleus | 64.62 | 63.32 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 65.13 | 63.18 |
| AT2G31160.1 | Thale cress | nucleus | 70.77 | 63.01 |
| Zm00001d003057_P001 | Maize | nucleus | 64.62 | 63.0 |
| Zm00001d017263_P001 | Maize | nucleus | 65.64 | 62.75 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 65.64 | 62.75 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 64.62 | 62.69 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 64.62 | 62.69 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 54.87 | 62.21 |
| KXG30661 | Sorghum | nucleus | 66.15 | 62.02 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 54.87 | 61.85 |
| Os10t0478000-01 | Rice | nucleus | 64.62 | 61.76 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 54.36 | 61.63 |
| AT5G58500.1 | Thale cress | nucleus | 57.44 | 61.54 |
| Zm00001d051143_P001 | Maize | nucleus | 63.08 | 60.89 |
| Os02t0623400-00 | Rice | nucleus | 65.13 | 60.77 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 53.85 | 60.69 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 64.1 | 60.68 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 64.1 | 60.68 |
| Zm00001d014032_P001 | Maize | nucleus | 65.13 | 60.48 |
| Zm00001d032696_P001 | Maize | nucleus | 65.13 | 59.62 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 49.74 | 59.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.67 | 59.09 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 52.31 | 58.29 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 60.0 | 58.21 |
| AT2G42610.1 | Thale cress | nucleus | 52.82 | 58.19 |
| KXG38327 | Sorghum | nucleus | 65.13 | 56.95 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 53.33 | 56.83 |
| AT1G07090.1 | Thale cress | nucleus | 56.92 | 56.63 |
| Zm00001d018433_P001 | Maize | nucleus | 71.28 | 56.28 |
| Zm00001d051966_P001 | Maize | nucleus | 70.26 | 55.69 |
| Os02t0811000-01 | Rice | nucleus | 70.77 | 55.65 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 64.62 | 55.51 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 45.64 | 55.28 |
| EES05986 | Sorghum | nucleus | 70.77 | 54.98 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 68.72 | 53.17 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 68.72 | 53.17 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 68.72 | 53.17 |
| AT1G16910.1 | Thale cress | cytosol | 44.1 | 52.44 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 64.1 | 51.87 |
| AT4G18610.1 | Thale cress | nucleus | 50.77 | 51.83 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 67.69 | 51.56 |
| AT1G78815.1 | Thale cress | nucleus | 50.77 | 50.77 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821908 | UniProt:A0A178VHD2 | ProteinID:AEE76748.1 | InterPro:ALOG_dom | ArrayExpress:AT3G23290 |
| EnsemblPlantsGene:AT3G23290 | RefSeq:AT3G23290 | TAIR:AT3G23290 | RefSeq:AT3G23290-TAIR-G | EnsemblPlants:AT3G23290.2 | TAIR:AT3G23290.2 |
| ProteinID:BAB02272.1 | EMBL:BT010794 | EMBL:BT011275 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | Symbol:LSH4 | RefSeq:NP_001078202.2 | ProteinID:OAP05827.1 | PFAM:PF04852 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF38 | UniProt:Q9LW68 | UniParc:UPI00000A41D4 | SEG:seg |
Description
LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
Coordinates
chr3:+:8326628..8328557
Molecular Weight (calculated)
21435.4 Da
IEP (calculated)
10.733
GRAVY (calculated)
-0.661
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.