Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88480 | Canola | nucleus | 91.28 | 96.22 |
| CDX87432 | Canola | nucleus | 90.26 | 92.63 |
| Bra035066.1-P | Field mustard | nucleus | 90.26 | 92.63 |
| CDY14588 | Canola | nucleus | 88.72 | 91.05 |
| CDY26881 | Canola | nucleus | 88.21 | 90.05 |
| Bra008382.1-P | Field mustard | nucleus | 87.18 | 89.01 |
| Bra003637.1-P | Field mustard | nucleus | 63.59 | 77.5 |
| AT1G16910.1 | Thale cress | cytosol | 62.56 | 74.39 |
| AT2G42610.1 | Thale cress | nucleus | 55.38 | 61.02 |
| KRH27347 | Soybean | nucleus | 57.44 | 60.87 |
| KRH21973 | Soybean | nucleus | 58.46 | 58.76 |
| PGSC0003DMT400039811 | Potato | nucleus | 60.51 | 57.56 |
| Solyc12g014260.1.1 | Tomato | nucleus | 60.0 | 57.07 |
| AT4G18610.1 | Thale cress | nucleus | 54.87 | 56.02 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 58.97 | 52.27 |
| AT5G58500.1 | Thale cress | nucleus | 48.21 | 51.65 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 49.74 | 51.05 |
| AT3G23290.2 | Thale cress | plastid | 50.77 | 50.77 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 48.72 | 47.26 |
| AT1G07090.1 | Thale cress | nucleus | 47.18 | 46.94 |
| AT2G31160.1 | Thale cress | nucleus | 48.72 | 43.38 |
Protein Annotations
| MapMan:35.1 | EntrezGene:844218 | ProteinID:AAC83029.1 | ProteinID:AEE36158.1 | InterPro:ALOG_dom | ArrayExpress:AT1G78815 |
| EnsemblPlantsGene:AT1G78815 | RefSeq:AT1G78815 | TAIR:AT1G78815 | RefSeq:AT1G78815-TAIR-G | EnsemblPlants:AT1G78815.1 | TAIR:AT1G78815.1 |
| EMBL:AY086257 | Unigene:At.70335 | EMBL:BT025756 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | Symbol:LSH7 | RefSeq:NP_565190.1 | PFAM:PF04852 | PO:PO:0000230 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF37 |
| UniProt:Q9ZVA0 | UniParc:UPI00000A35C6 | SEG:seg | : | : | : |
Description
LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
Coordinates
chr1:-:29631743..29632791
Molecular Weight (calculated)
21618.5 Da
IEP (calculated)
10.435
GRAVY (calculated)
-0.964
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.